<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03526

Description Uncharacterized protein
SequenceMEGATAAHPASSSVSAAHWMATEDLGLRRNIINNMVKKFMTITNSQQDHHYREIQNYAIRCEQDALNKTTNKEDYLRCIAQRIMNMEMKVRRSQSLQAGTTPSAQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQTVMVAAPDCYLNFNTTAISPVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVKNNQQNVGMSCQPMTPPQCQVATAQQSSLGCDSPQTLEPIVIAGEVDWREEIFQKKSNVHKGMQNIFPIFQQYLGQLRLSISKSKARKTVAKIGCQSQNCSENSHIVNLGSNTAPFTCDASRQQKQQEQVISAKTSRMEQAIMTRTPTPQQESHGCHLLGVPSSCFSPKALQPSSTNTIEECFTPSPVTQTVQPIQVTSPHVTSPGAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKPAVTEVDSCRACVTSKLKSPVGKPETAGAASPCASVKSTVSLDVDSVTEFLQHRVVAPTVANGCSSNQAIHTLVSAVPPKAAHQADDQVQNGAEEMEAKKPFSRLIETLLSSSPEALRHSSNSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDHVTSRPISSPLRSMDESCMTYECVAFEDESSGEYNAKRQKTQVNANDALVDEIKTINNKLVDTVMNIADENGTDEIIYQNGGGMLIKLSYNSMSLSPSLKSLFAASEMTIVMPVKLLVPADYPKSSPILVDNDDEQRRLSDISYAVAVAFGRAVDELLEPRSIEAMAMAWDGCVRRAVTEVAHRHGGGTFSSRHNQWRAG
Length920
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.553
Instability index62.37
Isoelectric point8.70
Molecular weight100329.83
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03526
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     185.67|      21|      21|     491|     511|       1
---------------------------------------------------------------------------
  491-  511 (32.75/17.36)	KSSVPKPSVARVVSHS.ASIKS
  515-  535 (24.93/11.19)	.SSPSRPEGAHAASPNiTSVES
  538-  558 (35.27/19.35)	PTPIAKPGTVRAASPC.TPVKS
  561-  581 (31.05/16.02)	QSQLSKPAVTEVDSCR.ACVTS
  584-  604 (38.52/21.91)	KSPVGKPETAGAASPC.ASVKS
  618-  637 (23.15/ 9.79)	QHRVVAPTVANGCSSN.QAIH.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     498.38|     160|     169|      63|     231|       2
---------------------------------------------------------------------------
   63-  223 (240.56/126.48)	.....................QDALNKT.TNKED.........YLRCiaqRIMNMEMKVRRSQSLQAGTTPSAQRPSSQ................QQ.NVCTTPQ......NPGQVPDQHRASAPNSQIEASQEQTV..MVAAPDcyLNFNTTAISPVAmCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSvsgQNFQQN.HV..LGQNAS
  224-  395 (214.59/95.80)	GSGTQQRQ..........................lvetpeqhqLLR........MKQQHMRGNQQQNFTQRNQILPAQQahlgkmqighpavknnQQ.NVGMSCQ.......PMTPPQCQVATAQQSSLGCDSPQTLepIVIAGE..VDWREEIFQKKS.NVHKGMQNIFPIFQQYLGQLRLSISKSKARKTVAKIGCQS...QNCSENsHIvnLGSNTA
  400-  482 (43.24/12.42)	DASRQQKQqeqvisaktsrmeQAIMTRTpTPQQE.........SHGC...HLLGVPSSCFSPKALQ.........PSST................NTiEECFTPSpvtqtvQPIQVTSPH....................................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.10|      23|      23|     684|     706|       3
---------------------------------------------------------------------------
  684-  706 (40.66/26.95)	RHSSNSMRLAIWEADRIPAPSPL
  709-  731 (39.44/25.91)	RPRNGKMKRDFDHVTSRPISSPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     188.28|      45|     138|     639|     683|       4
---------------------------------------------------------------------------
  639-  683 (73.26/44.64)	LVSAVPPKAAH...QADDQV..QNGAE.EMEAKKPFSRLIETLL.SSSPEAL
  780-  822 (58.69/34.30)	LVDTVMNIADE...NGTDEIiyQNGG..GMLIKLSYNSM...SL.SPSLKSL
  837-  886 (56.33/32.63)	LVPADYPKSSPilvDNDDEQ..RRLSDiSYAVAVAFGRAVDELLePRSIEAM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03526 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KVRRSQSLQAGTTPSAQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQ
2) PVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVKNNQQNVGMSCQPMTPPQC
3) TCDASRQQKQQEQVISAKTSRMEQAIMTRTPTPQQESH
4) TNTIEECFTPSPVTQTVQPIQVTSPHVTSPGAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKP
89
163
398
457
143
300
435
567










Molecular Recognition Features






MoRF SequenceStartStop




1) PLPYRPR
705
711