<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03525

Description Uncharacterized protein
SequenceMEGATAAHPASSSVSAAHWMATEDLGLRRNIINNMVKKFMTITNSQQDHHYREIQNYAIRCEQDALNKTTNKEDYLRCIAQRIMNMEMKVRRSQSLQAGTTPSAQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQTVMVAAPDCYLNFNTTAISPVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVKNNQQNVGMSCQPMTPPQCQVATAQQSSLGCDSPQTLEPIVIAGEVDWREEIFQKIKSFKDAYLSEVLEYDQIVHVPKLTEEQLRSLPVENAEKLRRIRHVKKIIAIMLDLLNTQKSNVHKGMQNIFPIFQQYLGQLRLSISKSKARKTVAKIGCQSQNCSENSHIVNLGSNTAPFTCDASRQQKQQEQVISAKTSRMEQAIMTRTPTPQQESHGCHLLGVPSSCFSPKALQPSSTNTIEECFTPSPVTQTVQPIQVTSPHVTSPGAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKPAVTEVDSCRACVTSKLKSPVGKPETAGAASPCASVKSTVSLDVDSVTEFLQHRVVAPTVANGCSSNQAIHTLVSAVPPKAAHQADDQVQNGAEEMEAKKPFSRLIETLLSSSPEALRHSSNSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDHVTSRPISSPLRSMDESCMTYECVAFEDESSGEYNAKRQKTQVNANDALVDEIKTINNKLVDTVMNIADENGTDEIIYQNGGGMLIKLSYNSMSLSPSLKSLFAASEMTIVMPVKLLVPADYPKSSPILVDNDDEQRRLSDISYAVAVAFGRAVDELLEPRSIEAMAMAWDGCVRRAVTEVAHRHGGGTFSSRHNQWRAG
Length980
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.534
Instability index61.67
Isoelectric point8.74
Molecular weight107399.06
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03525
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     160.43|      21|      22|     584|     604|       1
---------------------------------------------------------------------------
  542-  557 (27.45/13.42)	HVTSPGAYG.KSSVP....KP
  561-  580 (28.90/14.55)	RVVSHS.ASIKSRLASSPSRP
  584-  604 (36.35/20.41)	HAASPNITSVESTLPTPIAKP
  608-  627 (36.07/20.19)	RAASP.CTPVKSTSQSQLSKP
  631-  650 (31.66/16.72)	EVDSCR.ACVTSKLKSPVGKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.05|      22|      22|     744|     765|       2
---------------------------------------------------------------------------
  744-  765 (39.13/28.83)	RHSSNSMRLAIWEADRIPAPSP
  769-  790 (37.92/27.66)	RPRNGKMKRDFDHVTSRPISSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     237.98|      45|      59|     172|     216|       3
---------------------------------------------------------------------------
  105-  160 (55.88/24.57)	QRPSSQQQNVCTTPQNPGQVPDQHrasaPNSqIEASQEQTVmvaapdCYLNFNTTA
  172-  216 (79.14/37.70)	QQPQSQQHQQQAKQLHPTNVVGYN....PTS.LNQIQGQSV......SGQNFQQNH
  219-  248 (45.28/18.59)	GQNASGSGTQQ.RQLVETP....E....QHQ.LLRM................KQQH
  249-  287 (57.69/25.59)	MRGNQQQNFTQRNQILPA.....Q....QAH.LGKMQIGHP......AVKNNQQN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     248.33|      57|     137|     666|     743|       4
---------------------------------------------------------------------------
  441-  488 (72.01/28.88)	.......CSENSHIVNLGSNTAPFTCDASRQQKQQ..EQVISAKT.SRMEQAIMTRTP
  490-  541 (83.14/33.20)	PqQESHGC...HLLGVPSSCFSPKALQPSS...TNTIEECFTPSPVTQTVQPIQVTSP
  684-  740 (93.19/71.03)	P.TVANGCSSNQAIHTLVSAVPPKAAHQADDQVQNGAEEMEAKKPFSRLIETLLSSSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03525 with Med15 domain of Kingdom Viridiplantae
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