<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03521

Description Uncharacterized protein
SequenceMDAAALGAAAGAPNPAAPVGGDQQPRAERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDAIARANPNASPKWQDVLGQFSMVSMELFNIVEDIKKVSKVFVVYPRNVNAENAAILPVMLSSKLLPEMEAEEVTKRDNLLSGITNLTVSGQIEKLKTRIDMIGSACETAEKVIAESRKNYGLGARQGANLGPTLDKAQAAKIQEQEGLLRAAVNYGEGLRVPGDQRQMYSSLPSHLVDVLPFGDGAHNFGDNSGVYPKNTSTFVPNVVNTQGNPMQVSGGQLLGRPAPSPGTTGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGSMQSQSLLPQMQGLNHVWYGRRKFYQHDGNAAAAAIQHASKCSELATRHDKPPEPDTKSQLSPAEAAKPAMIQTDHRCEDPALNKAAKNNSL
Length549
PositionHead
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.578
Instability index50.44
Isoelectric point9.15
Molecular weight59315.14
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03521
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.21|      23|      24|     217|     239|       1
---------------------------------------------------------------------------
  217-  239 (42.00/22.94)	YGEGLRVPGDQRQMYSSLPSHLV
  244-  266 (41.21/22.38)	FGDGAHNFGDNSGVYPKNTSTFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     288.54|      66|      67|     333|     398|       2
---------------------------------------------------------------------------
  277-  328 (82.95/29.66)	.......MQVSGGQLLG.....RP..APSP..GTTGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQ
  333-  398 (110.67/41.70)	QQHRQKLMQTSQQQQLHTQQQLRPSAAGML..AQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQ
  403-  467 (94.92/34.86)	QMQAGRMQPGMSQSQLNQGNQLRSHISQFTgaANSAMFTAAQASSNSQMMANIPGS..MQSQSLLPQ.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03521 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AIQHASKCSELATRHDKPPEPDTKSQLSPAEAAKPAMIQTDHRCEDPALNKAAKNNSL
2) ANSAMFTAAQASSNSQMMANIPGSMQSQSL
3) HNFGDNSGVYPKNTSTFVPNVVNTQGNPMQVSGGQLLGRPAPSPGTTGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTG
492
435
249
549
464
433










Molecular Recognition Features






MoRF SequenceStartStop




1) WYGRR
475
479