<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03520

Description Uncharacterized protein
SequenceMDAAALGAAAGAPNPAAPVGGDQQPRAERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDAIARANPNASPKWQDVLGQFSMVSMELFNIVEDIKKVSKLLPEMEAEEVTKRDNLLSGITNLTVSGQIEKLKTRIDMIGSACETAEKVIAESRKNYGLGARQGANLGPTLDKAQAAKIQEQEGLLRAADCVYRETKGRCVYPKNTSTFVPNVVNTQGNPMQVSGGQLLGRPAPSPGTTGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGSMQSQSLLPQMQGLNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQFNMQANAQNLQQGMTSLQNQTQNPNFPQQRQQNQQ
Length493
PositionHead
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.697
Instability index49.73
Isoelectric point9.49
Molecular weight53621.74
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03520
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.97|      17|      18|     437|     453|       2
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  342-  358 (26.33/ 6.94)	QQYQNRQMQAGRMQPGM
  437-  453 (30.65/ 9.24)	DQMFGMGGANSTSMMGM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     159.92|      33|      69|     308|     340|       4
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  309-  341 (58.55/21.45)	QSAIPQLQDLQGQSQQKLQVPG............................QQQMQYN.QALS
  381-  405 (28.99/ 6.86)	NSAMFTAAQASSNSQMMANIPG............................SMQ.........
  407-  465 (32.16/ 8.42)	QSLLPQ...MQGLNQYSLTGGHpqrshpsqmltdqmfgmgganstsmmgmQQQQQFNmQANA
  466-  492 (40.22/12.40)	QNLQQGMTSLQNQTQNP.NFP..............................QQRQQN.Q...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.94|      34|      41|     176|     212|       5
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  176-  212 (50.28/37.05)	QAAKIQEQEGLLRAADCVYRETKGRCVYpKNTSTfvP
  218-  251 (62.67/34.85)	QGNPMQVSGGQLLGRPAPSPGTTGTPNF.ENVST..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.19|      34|      42|      25|      63|       6
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   25-   63 (50.72/47.87)	PRAERLSAGVQQQLNLEGMRaravgLY......KAISRILEDFDA
   69-  108 (53.47/37.72)	PNASPKWQDVLGQFSMVSME.....LFnivediKKVSKLLPEMEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03520 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KNTSTFVPNVVNTQGNPMQVSGGQLLGRPAPSPGTTGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGSMQSQSLLPQMQGLNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQFNMQANAQNLQQGMTSLQNQTQNPNFPQQRQQNQQ
205
493










Molecular Recognition Features






MoRF SequenceStartStop




NANANA