<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03518

Description Uncharacterized protein
SequenceMDAAALGAAAGAPNPAAPVGGDQQPRAERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDAIARANPNASPKWQDVLGQFSMVSMELFNIVEDIKKVSKLLPEMEAEEVTKRDNLLSGITNLTVSGQIEKLKTRIDMIGSACETAEKVIAESRKNYGLGARQGANLGPTLDKAQAAKIQEQEGLLRAAVNYGEGLRVPGDQRQMYSSLPSHLVDVLPFGDGAHNFGDNSGVYPKNTSTFVPNVVNTQGNPMQVSGGQLLGRPAPSPGTTGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGSMQSQSLLPQMQGLNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQFNMQANAQNLQQGMTSLQNQTQNPNFPQQRQQNQQ
Length524
PositionHead
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.674
Instability index51.10
Isoelectric point9.21
Molecular weight56796.07
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03518
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     311.95|      69|      69|     303|     371|       1
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  303-  338 (44.87/ 8.74)	......................................QQHLTAQ.QHRQKLMQTSQQQQLHTQQQLRPSAAGML
  339-  408 (112.02/32.00)	AQSAIPQLQDLQGQSQQKLQVPGQQQMQYN.QAL...sQQYQNRQ.MQAGRMQPGMSQSQLNQGNQLRSHISQFT
  411-  466 (84.93/22.61)	ANSAMFTAAQASSNSQMMANIPGS..MQ.S.QSL...........lPQMQGLNQYSLTGG.HPQRS.HPSQ..ML
  467-  524 (70.13/17.49)	TD....QMFGMGGANSTSM.MGMQQQQQFNmQANaqnlQQGMTSL.QNQTQNPNFPQQRQQNQQ...........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.85|      28|      33|     235|     266|       2
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  235-  266 (47.34/31.01)	PKNTstfvPNVVNTQGNPMQV.....SGGQLLGRPAP
  270-  302 (49.51/24.31)	TTGT....PNFENVSTPPMPYansprSGTNMMNTPSP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.16|      12|      46|      52|      63|       4
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   52-   63 (19.62/15.55)	KAISRILEDFDA
   97-  108 (18.53/14.30)	KKVSKLLPEMEA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.44|      22|      25|     186|     207|       5
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  139-  158 (27.38/19.07)	M...IGSACETAE..KVIAESRKNY
  186-  207 (38.36/30.26)	L...LRAAVNYGEGLRVPGDQRQMY
  210-  234 (28.71/20.43)	LpshLVDVLPFGDGAHNFGDNSGVY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03518 with Med8 domain of Kingdom Viridiplantae
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