<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03514

Description Uncharacterized protein
SequenceMAAPPTPSPSLDYWRGFFSGARASIFDAIDAAIRVAAADHPDALRARRDGIAERLYTALVVLPPPPPARAPVPPVAAAAEAATRPDRRLLLPEAARGVPSLCSSDRAEAVVTDDDDGAAAAVAPRGDCHDRVADEAFRVKAALSNAQEKTEAELLELLHALQQLEFTVDAIRVTEIGTAVKPLRKHDIRTNGEESAQQHYPANQEPAKKQLPMGQRYDPEQNWKLDQSAMRQSQPYEPSNWQKKQQSVTGARQRPSAAAHGPWTPQKMHLEPKFSEMQPKRQQDTSVAQRRPKPTMANIQNHQQVL
Length306
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.688
Instability index57.61
Isoelectric point7.83
Molecular weight33645.44
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03514
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.52|      24|      38|     219|     255|       1
---------------------------------------------------------------------------
  198-  216 (17.96/23.02)	..QHY.P..ANQEpAKKQLPMGQR...
  232-  255 (47.40/18.87)	QSQPYEP..SNWQ.KKQQSVTGARQRP
  266-  292 (33.16/ 9.24)	QKMHLEPkfSEMQpKRQQDTSVAQRRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.64|      37|      38|      47|      84|       2
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   47-   84 (59.52/32.32)	RRDGIAERlYTALVVLPPPPPARAPV..PPVAAAAEAATR
   87-  125 (56.12/26.70)	RRLLLPEA.ARGVPSLCSSDRAEAVVtdDDDGAAAAVAPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.92|      22|      39|     131|     153|       3
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  131-  153 (29.88/23.07)	RVADEAFRVKaALSNAQEKTEAE
  172-  193 (37.04/24.12)	RVTEIGTAVK.PLRKHDIRTNGE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03514 with Med26 domain of Kingdom Viridiplantae
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