<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03511

Description Uncharacterized protein
SequenceMQLRLHIPPSVDLFPFPQTARAHQVRSATLLNPRSEQAHRTTPVAGDGSGASAMDGAHGQRQPMSPAISASAVLPQQRQMQLHHHHHHHPARSAIADLFTLYLGMNSTQRVEDPTRETSNKLQKRVTAMNRDLPPRDEQFISDFEQLHMQFPDQEQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNVVSSVEVPMGQGVSVTTGGPATSSSSAIAVPNAPSFHPSNPTSPLSAMNTIGSPTQSGIDQPIGANVSPIKGAEFSSPGQLGLTARGDQSRRGAEISYLHHLSCRIILAGLDNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVANSRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRQHPQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTSLDERAMGMFWVLSFTMAQPACEAVMNWFTSVGVADLIQGPNLQPNERMTMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQNVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKVKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITMKTRGIAEVEHIIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLVGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPTYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHQIQDLLSKAITNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERPELQQRIKAFCTSRSPEHWLKNQPPKRVELQKALGNHLSGKERYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAVYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLASSNSSICPPPEYFSNLLFGLVNNVIPPLSCKSKSNPSDAAGCTARTTYNKPHTSSAGGISNSDGQRAFYQNQDPGSYTQLVLETAAIEILSLCVPASQIVSSLVQIIAHVQAMLIQSNSGHGMSGGLGQNSGVPTSSGGGIEPVGANRPNTTASGINASNFVSRCGYSCQQLSVLMIQACGLLLAQLPPEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPHEWLESTHTVIRHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPPVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVMEILRPDVQHLLSHLKTDPNCSVYAATHPKLVQNPS
Length1598
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.078
Instability index46.92
Isoelectric point7.13
Molecular weight178511.35
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03511
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.53|      16|      80|    1245|    1260|       1
---------------------------------------------------------------------------
 1245- 1260 (31.10/23.12)	PHTSSAGGISNSDGQR
 1328- 1342 (28.27/20.15)	P.TSSGGGIEPVGANR
 1343- 1354 (16.17/ 7.46)	PNT.TASGINASN...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.35|      14|      18|     226|     240|       2
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  226-  240 (20.73/15.23)	PaTSSSSAIAVPNAP
  247-  260 (26.62/15.22)	P.TSPLSAMNTIGSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.49|      23|     183|    1360|    1389|       4
---------------------------------------------------------------------------
 1365- 1389 (35.70/31.22)	QLSVLMIqaCGLLLAQLPPEFHTLL
 1552- 1574 (39.79/16.43)	KLEILTL..CGKVMEILRPDVQHLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.25|      19|      22|     408|     429|       5
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  408-  429 (32.88/25.70)	PkggLDWERAL...RCLR.HALR.TTP
  431-  454 (29.37/14.66)	P...DWWRRVLlvaPCYRqHPQQsSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.85|      16|      18|     363|     378|       6
---------------------------------------------------------------------------
  363-  378 (29.80/18.68)	ATHRFLSQSYPSIAGE
  381-  396 (30.05/18.91)	ANSRYSPITYPSVLGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.36|      17|      18|    1187|    1203|       7
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 1187- 1203 (30.81/17.00)	ESFAQYLASSNSSICPP
 1205- 1221 (30.55/16.80)	EYFSNLLFGLVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.13|      14|      18|       6|      23|       8
---------------------------------------------------------------------------
    9-   23 (21.89/20.01)	PSVDLFPfPQTARAH
   26-   39 (24.25/ 7.24)	RSATLLN.PRSEQAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.83|      10|      15|     643|     652|       9
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  643-  652 (20.12/11.50)	MFWVLSFTMA
  660-  669 (19.71/11.11)	MNWFTSVGVA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.40|      19|      25|    1466|    1487|      10
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 1466- 1487 (29.33/23.67)	RPV..NSVAMLriaFRILGPLLPR
 1492- 1512 (28.07/14.74)	RPLfmKTLALL...FNVLGDVFGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.63|      16|      20|     548|     563|      11
---------------------------------------------------------------------------
  548-  563 (26.29/16.62)	SSDPRKVETTRKIISF
  569-  584 (27.34/17.61)	SLDPNNISPQSILLDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.12|      53|     392|     302|     361|      14
---------------------------------------------------------------------------
  302-  361 (88.92/61.35)	ISYLHHLS...CRIILAGLDNLQFL.ENIPddealvSIIM.EIHRRRDMVCMHmQMLDQHLHCPT
  694-  751 (78.21/40.75)	MSLLSGLSinlCLKLAFQLEETIFLgQNVP......SIAMvETYVRLLLITPH.SLFRPHFTTLT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.39|      14|      15|     158|     172|      15
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  158-  172 (18.78/15.86)	QAvTESVLISFVLQC
  175-  188 (25.61/16.75)	HA.PQSEFLLFATRC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.69|      10|      15|    1035|    1044|      16
---------------------------------------------------------------------------
 1035- 1044 (15.54/ 8.70)	LLLALIDRDD
 1051- 1060 (16.15/ 9.34)	LVINLLERPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.49|      13|      18|    1140|    1157|      17
---------------------------------------------------------------------------
 1140- 1155 (16.44/20.77)	YstFLAFHPLRFtFVR
 1160- 1172 (25.05/ 9.12)	Y..FYGHLPSKL.IVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.54|      27|     392|     590|     617|      18
---------------------------------------------------------------------------
  590-  617 (42.35/25.64)	TLRIWSFNTSIREHLNSDqLQKGKQIDE
  985- 1011 (46.18/24.07)	TANIYTMVDVLLHHIQLE.LQRGHQIQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.32|      12|      16|      51|      62|      19
---------------------------------------------------------------------------
   51-   62 (21.97/14.05)	ASAMDGAHGQRQ
   70-   81 (21.35/13.43)	ASAVLPQQRQMQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03511 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AHQVRSATLLNPRSEQAHRTTPVAGDGSGASAMDGAHGQRQPMSPAISASAVLPQQRQMQLHHHHHHH
22
89










Molecular Recognition Features






MoRF SequenceStartStop




NANANA