<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03510

Description Mediator of RNA polymerase II transcription subunit 11
SequenceMGRFSNGVLGALSFAALLASVPLIGAGAYLLDHPASECQRLVRVPAVALGGAALLLSLMAIAGITCCRGAALLWAYASAMFLLIVGMFFVTAFVFVVTNRGVATAVSGTGYGEYRVRDYSEWLRARIEDYETWHRIESCMADAAVCGGPLAGINPGEFYRQHLPLIQSGCCKPPVYCGYERVNETFWMAPARGLDAADVDCLEWSNDQAVLCFRCNACKASVLDTARRNWRAVAAINVAVLAILMLAYSLACCSMRDRSRPRPLKYPLQLGWKLKVRNPSSSPVVAMLPQSQSSSLQRLNHVEQRIVQLMQLVGAVMEELGNSQGPRPEKVVAHCREYMLAIKEIQTTLREEIKSACEYRPFEKSDYSARIANEISCKKVEYG
Length383
PositionHead
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.09
Grand average of hydropathy0.153
Instability index42.54
Isoelectric point8.62
Molecular weight42109.58
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03510
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.42|      26|      40|      11|      36|       1
---------------------------------------------------------------------------
   11-   36 (46.43/33.08)	ALSFAALLASVPLIGA.....GAYLLDHPAS
   48-   78 (39.99/27.43)	ALGGAALLLSLMAIAGitccrGAALLWAYAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.58|      15|      41|     105|     123|       2
---------------------------------------------------------------------------
  105-  123 (24.48/26.51)	AV.....SGTGYGEYrvrdYSEWL
  144-  163 (23.09/13.70)	AVcggplAGINPGEF....YRQHL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03510 with Med11 domain of Kingdom Viridiplantae
Unable to open file!