<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03508

Description Uncharacterized protein
SequenceMDGVGLGVHRRWDTSGSGSQYSFRTSVSSVAEISSEVGVEVRPPAAAAAAAEDKVFVAVAADMKHGKSALQWALQNLAKDGAKVVIAHVHCPAQMIPMMGAKVHYTKMNTKQVNDYRNKEREKAEEKLDEYLLICKKLKVSCEKLIIEEDDIAKGLTDLVALHGVTKLVMGAAADKHYSRKMNTPKSKTALKILEAADPSCKIWFTCKGHLICTREANTTVPAIPPSPAYTVASTLSSSSISSRMRSMSLHPSESEASSSSGSPRHDLNRSRTEVAKYPSQGSGTAPSQLFGHSDQDVNDRPTRTAMGSIDSWDEFGRLQNSCYDSSRNSDTVRVSGSAMQQPMYEPDDDHFASPRKLENSGDDADIYDRLQEALRETQYLKKETYEESTKRRNAERNLFSALQKASHFASKVKEWENLYQKEVMHRKITEEALEKQIQETEETERHCNALYDKLHDVEEQKLMVEQHITEMEAVLKEREDRLHGVEEQKFTLEQRITEMQAVLKEHEDKLHDVEEQKLMVEHPLTEMRSVLKEREEKLAESKYLLQVLQADKEKLQQERDAAVSEAQDLRLKNKQRISMPGEDLNTEFSSYELEQATRGFDQELQIGEGGFGSVYKGMLRNTTVAIKLLHPHSMQGQSEFDQEIAVLSRVRHPNLVTLIGSCREAFGLVYEFLPKGSLEDRLACLNNTPPLTWQVRTKIIYEMCSALSFLHSNKPHPIVHGDLKPANILLDANFVSKLGDFGICRLLIQSNTGAAAATTRLYRTTTPKGTFAYMDPEFLTTGELTPRSDVYSLGIIILRLLTGKPPQKIAEVVEDAIESGELHSILDPSAGSWPFVQANQLAHLGLRCAEMSRRRRPDLATDVWKAIEPLMKAASLTAGRPSFVARPDDSPPPSYFVCPIFQEEMNDPHIAADGFTYEAEAIKGWLDSGHDTSPMTNLTLEHRELIPNRALRSAILEWQQQRQRHQQQEEDDDCT
Length976
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.576
Instability index50.30
Isoelectric point5.75
Molecular weight109647.55
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03508
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.75|      10|      26|     453|     462|       1
---------------------------------------------------------------------------
  453-  462 (21.51/11.29)	DKLHDVEEQK
  481-  490 (20.72/10.64)	DRLHGVEEQK
  509-  518 (21.51/11.29)	DKLHDVEEQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     118.76|      18|      54|     463|     480|       2
---------------------------------------------------------------------------
  423-  442 (21.04/11.20)	EVMHRKITEeaLEKQIQETE
  463-  480 (34.02/22.75)	LMVEQHITE..MEAVLKERE
  491-  508 (31.59/20.59)	FTLEQRITE..MQAVLKEHE
  519-  536 (32.11/21.05)	LMVEHPLTE..MRSVLKERE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.13|      55|      72|      52|     123|       3
---------------------------------------------------------------------------
   52-  110 (82.75/85.87)	EDKV..FVAVAADMKHGKSALQWALQNLAKdGAKVVIAhVHCPAQMIpmMGAKV..HYT.KMNT
  125-  184 (78.38/42.69)	EEKLdeYLLICKKLKVSCEKLIIEEDDIAK.GLTDLVA.LHGVTKLV..MGAAAdkHYSrKMNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.52|      38|      51|     283|     321|       4
---------------------------------------------------------------------------
  283-  321 (66.71/47.41)	SGTAPSQLFGHSDQDVNDRPtRTAMGSIDSWDEFGRLQN
  336-  373 (70.81/45.91)	SGSAMQQPMYEPDDDHFASP.RKLENSGDDADIYDRLQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.43|      24|      52|     579|     617|       6
---------------------------------------------------------------------------
  579-  617 (33.54/55.51)	SMPGEdlnTEFssyeleqatrgfDQELQ.............IG..EGGFGSVYK
  634-  672 (31.89/18.97)	SMQGQ...SEF............DQEIAvlsrvrhpnlvtlIGscREAFGLVYE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.16|      41|      49|     794|     837|       7
---------------------------------------------------------------------------
  794-  837 (61.30/49.93)	LGIIILRLLTGKPPQkIAEVVEDAIEsgELHSILDPSAGSWPFV
  845-  885 (71.86/46.85)	LGLRCAEMSRRRRPD.LATDVWKAIE..PLMKAASLTAGRPSFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.37|      17|      19|     381|     399|       8
---------------------------------------------------------------------------
  381-  399 (19.45/17.98)	LKKETYEEStKRRNAErNL
  403-  419 (29.92/16.52)	LQKASHFAS.KVKEWE.NL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03508 with Med32 domain of Kingdom Viridiplantae
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