<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03504

Description Uncharacterized protein
SequenceMDIDAESSKESPKSIDGNSKLKGKSTSSEKELRIHGALPFCCGLTWTSWRTLPLARSRSTAHLAACWLFLSRSTATTVELSLPSLSPPPCEDAEDEKADRYMLPHLTGKKIVGVGEEEEETKKERILLPLLLSLFFPLLRFLIKPTKKCRRFHCGEQVPAARVAREAAEAYARDRHARAQEALRPFRRIFAAAAAAANATVETVVLEGDGVAEALVRYAADSGVRSLVLGSASLGWFRRAMSVPDVATAVLKTTEISCNVFVVSKRRLTLKVTRHPQMSRSGTGLRIQSVSQKAFAQSYRSLLFDNFPENGIHPDSWCQSRVSHCGPTNARHSSESHGQILFNSLGAKTTGIEGYKNHGFRSPFKEAHYSDSNSSEECQSIDEVAKLRKELQDTLVMYDKACEDLVHAKKKIQVLSSECSEEARKVEHALQKEEALKQVVADEKAKHLEAIEEVEQAKKSFTREAYSRNKAEMVASMISLDKAKVVDAILSTSKNCRRYKEHEIELATDNFSEARKIGEGGYGNVYRCTLDHTEVAVKVIQQDSIDKTDEFLREVDILSQLQHPNLVLLLGFCPEIGCLVYEYLQNGSLEDQLLNNKGRQPLHWFLRFQIIFDVSCGLAFLHGRKPEPIVHRDLKPANILLNKNYVGKIGDAGFAKLISDLVPDWQTEYKETIIAGTLYYMDPEYQQTGTVRPKSDLFGLGVIILQMLTGKRPNGLIVSVENAIRNGMLADILDKSQTDWPLVEAEMLAKLGLRCTALKCRERPGLESEVLPKLQEILHRITSTVNLRSPKLNVPSHFICPIMQEVMNDPYVAADGHTYEQQAIKAWFKKHKVSPSAVRTLGRRAVAGK
Length849
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.335
Instability index52.90
Isoelectric point8.55
Molecular weight94850.62
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03504
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.47|      12|      20|     196|     208|       2
---------------------------------------------------------------------------
  196-  208 (15.29/14.12)	AANATVETVVLeG
  219-  230 (20.18/12.99)	AADSGVRSLVL.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.03|      13|      19|     389|     407|       3
---------------------------------------------------------------------------
  389-  404 (17.85/25.75)	KELQdtlVMYDKACED
  410-  422 (21.18/ 8.08)	KKIQ...VLSSECSEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     330.41|     102|     137|     497|     602|       8
---------------------------------------------------------------------------
  497-  602 (166.12/138.12)	RRYKEHEIELATDNFSearKIGEGGYGNV.......YRCTLDHTEVAVKVIQQDSIDKTDEFLREVDILSQLQHPNLVLLLGFCPEiGCL..VYEYLQNGSLEDQLLNNKGRQPL
  632-  742 (164.29/123.63)	RDLKPANILLNKNYVG...KIGDAGFAKLisdlvpdWQTEYKETIIAGTLYYMDPEYQQTGTVRPKSDLFGLGVIILQMLTGKRPN.GLIvsVENAIRNGMLADILDKSQTDWPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.85|      20|      23|      82|     104|       9
---------------------------------------------------------------------------
   85-  104 (37.94/22.52)	LSPPPC....EDAEDEKADRYMLP
  106-  129 (26.91/ 8.23)	LTGKKIvgvgEEEEETKKERILLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.65|      19|      20|     153|     172|      10
---------------------------------------------------------------------------
  153-  172 (29.23/23.23)	HCGEQvPAARVAREAAEAYA
  176-  194 (32.43/20.88)	HARAQ.EALRPFRRIFAAAA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03504 with Med32 domain of Kingdom Viridiplantae
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