<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03499

Description Uncharacterized protein
SequenceMAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIPGPGDKPMIVVQYKGEEKQFSAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDDKIASKLSADDKKKIEDAIDGAINWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGADMGGAAGMDEDAPAGGSGAGPKIEEVD
Length689
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.483
Instability index34.70
Isoelectric point5.22
Molecular weight75766.02
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03499
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     188.20|      40|      40|     501|     540|       1
---------------------------------------------------------------------------
  101-  126 (25.45/11.70)	GDKPMI.VVQYKGeekQFSAEEISSMV................
  501-  540 (81.38/53.12)	GQKNKITITNDKG...RLSKEEIEKMVQEAEKYKAEDEEHKKK
  542-  581 (81.38/53.12)	GQKNKITITNDKG...RLSKEEIEKMVQEAEKYKAEDEEHKKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.56|      23|      26|      32|      54|       2
---------------------------------------------------------------------------
   12-   30 (27.93/17.64)	..DLG..TTYSCVGVWQHDRVEI
   32-   54 (40.56/28.91)	ANDQGNRTTPSYVAFTDSERLIG
   56-   77 (34.07/23.12)	AAKNQVAMNPINTVF.DAKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.24|      18|      41|     336|     355|       3
---------------------------------------------------------------------------
  336-  355 (25.55/25.20)	VHDVVLVGGSTRipKVQQLL
  380-  397 (29.70/20.54)	VQAAILSGEGNE..KVQDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.65|      17|     189|     169|     187|       4
---------------------------------------------------------------------------
  169-  187 (22.56/23.44)	GLNVMRIINePTaAAIAYG
  361-  377 (32.09/21.32)	GKELCKSIN.PD.EAVAYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.85|      21|      42|     622|     646|       5
---------------------------------------------------------------------------
  597-  617 (30.84/16.36)	NTIKDDKIASKLSADDK.KKIE
  625-  646 (31.02/32.99)	NWLDSNQLAEADEFEDKmKELE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03499 with Med37 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVGQKNKITITNDK
2) RLSKEEIEKMVQEAEKYKAEDEEHKKKVDAKNA
498
555
553
587










Molecular Recognition Features






MoRF SequenceStartStop




1) GPKIEEVD
682
689