<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03497

Description Uncharacterized protein
SequenceMAVASARSSLPSSSSSPLPPLSPQSVVPAGVERMLVRGGGTRSLREIDEEDDDDDGGGKTYVSVGKDLKDGKANIQWAARKLQPQQGDVNKLLVLLHVHQPADRIMSGFSKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLTEILVIEKNNVANGIVELIDQHHITKLVMGTSSFSVKRQVPKSKVAAVVHQQAKPYCQILYICKEALACTREASQFGDKGDSPRSSSGSSLSDKSEFPPRSVSLPSWYSGFLGSPDQQSLPQRSNSISHPFPFSRHLENGVENISPIRPNSVDVAPKGCSPNSSHQSNGVSSLTLTYLDPVDGSSVPVSSSSSEEHQHSMVEANVQNEMFEQWQQVRNELERSRKEASEGRQKAEKELFEASKMFRARENSLCKEKIAVEERLTREKVSLEKEHLQIYNELQKANEQIMELERKLMHANSLMEELQTVQGELQRQKDNAVKEAEKMSQINCNNVSCSTGAVALTEFTYTEIKEATNDFDESKMIGHGGCGSVYKGFLRHTTVAVKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKSIAHGDLKPDNVLLGDNFVGKLGDFGISRPLNLTNTTITPYHRTNQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCQYDRKERPDLAKEAWGVLQAMVNYPDNKCKIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKMSPMTYLSFTHYELIPNNALRFAIQEWQMKQQL
Length847
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.516
Instability index48.76
Isoelectric point6.24
Molecular weight94744.48
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03497
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.20|      26|      30|     273|     301|       1
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  220-  244 (31.61/13.20)	KGDSPRS...SSG.SSLSdksefP..PRSVS
  272-  294 (37.46/25.96)	...FPFSRHLENGVENIS.....PIRPNSVD
  298-  323 (46.13/24.78)	KGCSPNSSHQSNGVSSLT.....LTYLDPVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     133.63|      29|      30|     349|     377|       2
---------------------------------------------------------------------------
  347-  375 (48.63/28.51)	QN..............EMFEQWQQVR...N.ELERSRKEASEGRQKA
  376-  406 (38.32/21.07)	EK..............ELFEASKMFRareN.SLCK.EKIAVEERLTR
  407-  425 (21.96/ 9.27)	EK............................vSLEKEHLQIYNELQKA
  426-  466 (24.72/11.26)	N.eqimelerklmhanSLMEELQTVQ...G.ELQRQKDNAVKEAEK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.90|      27|      30|     492|     520|       3
---------------------------------------------------------------------------
  492-  520 (44.00/34.71)	IkeATNDFDESKMIGHGGCGSVYK..GFLRH
  523-  551 (40.90/25.77)	V..AVKKFNREGITGEKEFDDEVEilGRMRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.67|      22|     322|       8|      31|       4
---------------------------------------------------------------------------
    8-   31 (35.35/23.57)	SSLPSSSSSplPPLSPQSVVPAGV
  325-  346 (39.32/20.19)	SSVPVSSSS..SEEHQHSMVEANV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.25|      11|     322|     147|     159|       5
---------------------------------------------------------------------------
  128-  138 (18.92/ 7.99)	IEKDDM.NKLLE
  147-  158 (14.33/15.60)	IEKNNVaNGIVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.35|      22|     227|     571|     592|       6
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  571-  592 (43.72/31.71)	FLPNG.SLEDRLQCKHQTDPLPW
  798-  820 (37.63/26.16)	FTYEGeAIKDWLQRGHKMSPMTY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03497 with Med32 domain of Kingdom Viridiplantae
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