<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03496

Description Uncharacterized protein
SequenceMGFVDLWPGIVLVNLLQEEPAPSNIQLPPPLRACLVGEIKFFGCYIGQSGCWRNDCQLHASDISNLMPKLPNYFEPTPQPILEKLHVGHPVLSLHNAKIDHLAHKAWILPIDLRNGVIQQPIDFVGADGTVGICETAVNLSCLRCMAVASARSSLPSSSSSPLPPLSPQSVVPAGVERMLVRGGGTRSLREIDEEDDDDDGGGKTYVSVGKDLKDGKANIQWAARKLQPQQGDVNKLLVLLHVHQPADRIMSGFSKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLTEILVIEKNNVANGIVELIDQHHITKLVMGTSSFSVKRQVPKSKVAAVVHQQAKPYCQILYICKEALACTREASQFGDKGDSPRSSSGSSLSDKSEFPPRSVSLPSWYSGFLGSPDQQSLPQRSNSISHPFPFSRHLENGVENISPIRPNSVDVAPKGCSPNSSHQSNGVSSLTLTYLDPVDGSSVPVSSSSSEEHQHSMVEANVQNEMFEQWQQVRNELERSRKEASEGRQKAEKELFEASKMFRARENSLCKEKIAVEERLTREKVSLEKEHLQIYNELQKANEQIMELERKLMHANSLMEELQTVQGELQRQKDNAVKEAEKMSQINCNNVSCSTGAVALTEFTYTEIKEATNDFDESKMIGHGGCGSVYKGFLRHTTVAVKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKSIAHGDLKPDNVLLGDNFVGKLGDFGISRPLNLTNTTITPYHRTNQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCQYDRKERPDLAKEAWGVLQAMVNYPDNKCKIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKMSPMTYLSFTHYELIPNNALRFAIQEWQMKQQL
Length992
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.416
Instability index50.20
Isoelectric point6.15
Molecular weight110708.95
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03496
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.20|      26|      30|     418|     446|       1
---------------------------------------------------------------------------
  365-  389 (31.61/14.24)	KGDSPRS...SSG.SSLSdksefP..PRSVS
  417-  439 (37.46/27.97)	...FPFSRHLENGVENIS.....PIRPNSVD
  443-  468 (46.13/26.70)	KGCSPNSSHQSNGVSSLT.....LTYLDPVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.99|      28|      30|     494|     522|       2
---------------------------------------------------------------------------
  494-  522 (45.03/33.53)	EMFEQWQQVR...NELERsRKEASEGRQKAEK
  523-  553 (41.95/26.31)	ELFEASKMFRareNSLCK.EKIAVEERLTREK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.92|      30|      30|     556|     585|       3
---------------------------------------------------------------------------
  556-  585 (48.67/35.41)	LEKEHLQIYNELQKANEQIMELERKLMHAN
  587-  616 (47.25/34.15)	LMEELQTVQGELQRQKDNAVKEAEKMSQIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.90|      27|      30|     637|     665|       4
---------------------------------------------------------------------------
  637-  665 (44.00/31.44)	IkeATNDFDESKMIGHGGCGSVYK..GFLRH
  668-  696 (40.90/23.32)	V..AVKKFNREGITGEKEFDDEVEilGRMRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.62|      23|     318|     153|     177|       5
---------------------------------------------------------------------------
  153-  177 (36.70/29.54)	SSLPSSSSSplPPLSPQSVVPAGVE
  470-  492 (40.92/25.65)	SSVPVSSSS..SEEHQHSMVEANVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     226.65|      68|     653|      66|     140|      10
---------------------------------------------------------------------------
   66-  140 (110.33/102.89)	LMPKLPNYFEPTPQPILEKLHVGHPVLS....LHNAKIDHLAHKawilpiDLRNGVIQQPIDFVGADGTVGICEtAVNL
  722-  793 (116.32/87.07)	LEDRLQCKHQTDPLPWRMRIKIAADICTalifLHSNKPKSIAHG......DLKPDNVLLGDNFVGKLGDFGISR.PLNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.39|      17|     864|       9|      28|      11
---------------------------------------------------------------------------
    9-   28 (25.49/21.39)	GIVLVNLLqeePAPSNIQLP
  834-  850 (29.90/16.67)	GVVLLRLL...TGKSPLGLP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03496 with Med32 domain of Kingdom Viridiplantae
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