<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03495

Description Uncharacterized protein
SequenceMATAGSSSPYPGDSPEPSFSGEKVYVAVGEESSRGTLLWALHKFPQGTAFVLLHVYSPPNFLPILGAKIPAGQLREQELIAHKKMNLQRISDNLDQYQLICAQHKVQAEKLVVESDDVAHGLVDLISEHNVSMLVMGAADDKHYTKKAAPFGHDVMQDCRQSATSAQCSVERSSSLPEIWCVSNTWLHKLNLEPHIETTSSDRYSDKEKEDTKERDESDNELQHIPMQLERVRQEAYEEKYRREKAEQELFEALQKAQVSENLYFGELKQKNEIVVKLATTMEEVDRLARTADELAAKLQEQCEKILVLEKRSAHSDRIIKDLMLQRDKAVREAEAIRVKSGESTAIADRTIPITELSISEIKEATSNFDHSSKVGESIYGSVYKGLLWQTNVAVKKLNPESTESLSQFNHEVEILSRVRHPNLVTLIGACKDAQALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMLTDEFKATTTLYRHTHPKGSFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEVWTVLEPMLRSASSMLCSLSFKSVSEDFGNVPSYFICPIQQDVMRDPLIAADGFTYEAEAIREWFDSGHYTSPMTNLDLPHRDLLPNHALRSAIQEWLQSNAD
Length730
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.379
Instability index44.93
Isoelectric point5.69
Molecular weight81943.97
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03495
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     309.77|     118|     349|     250|     377|       1
---------------------------------------------------------------------------
  250-  377 (171.20/140.21)	LFEALQKAQV.SENLyfgELKQKN.EIVVKLATTMEEVDRLARTADELAAKLQEQCE..KILVLEKRSAHS..DRII.KDLMLQRDKAVREAEAIR..VKSGESTAiadrtiPITELSISEiKEATSNFDHSSKVGE
  379-  455 (69.88/40.52)	IYGSVYKGLLwQTNV...AVKKLNpESTESLSQFNHEVEILSRVRHPNLVTLIGACKdaQALVYEYMPNGSldDRLAcKD.........................................................
  665-  723 (68.68/40.81)	...................................................................PIQQ..D.VM.RDPLIAADGFTYEAEAIRewFDSGHYTS......PMTNLDLPH.RDLLPNHALRSAIQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.95|      20|      25|     202|     221|       6
---------------------------------------------------------------------------
  202-  221 (32.21/20.32)	DRYSDKEKEDTKERDESDNE
  230-  249 (31.74/19.92)	ERVRQEAYEEKYRREKAEQE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03495 with Med32 domain of Kingdom Viridiplantae
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