<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03477

Description Uncharacterized protein
SequenceMKTEQAELGQSSDAHFDVLKVFRGRRPSFLIIPCWVLPFLPSCSDGDLTKSWKQSIREREVHVSTDGVSTAGGRLRRLAPKLLLFLVSVRTCLVSDRDICGTEHVWHAKEHYDQWLGERSFAQMTGRQQHPQSSTHRQLPLRQVQPIQQPSISLKQEQQELLDHKPNLQKCQLIGQSDGSVNTQRHQRLPVQSNGSMSLHQSQQLDSQGNLNISSLQQQQLLGTYPIVSNIPGMHMLKKIKVEVQHPLHDHQQTMGLIQPQSQHNQHQQSQQHIMTAFQSQSNQLQQELGMGQQPSVQQSLQISTGMFVQQNNIDKQKQYTQAQCGLQEVPFSTTMDITAQTGHPGECYLQDEIYDMIKSLKDQYFTELTDLYNEMFLKLQSHMPPQIPIDHYEEMKKFKLFLERALHFLEIKKESIQPSLWEKIPEYERQIINAISSQRMQPVRKQEQQFHQSSTQITNSNIPQQQQASPGSGDWQESSYQMIKRLKDKHFAELSHLCNKLSMKLEYVDSQM
Length513
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.740
Instability index69.42
Isoelectric point7.37
Molecular weight59271.48
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03477
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.61|      15|      15|     251|     265|       1
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  251-  265 (28.86/11.72)	HQQTMGLIQP..QSQHN
  267-  283 (21.75/ 6.89)	HQQSQQHIMTafQSQSN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.06|      13|      15|     176|     189|       2
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  141-  153 (20.68/ 6.56)	LRQVQPIQ.QPSIS
  199-  212 (17.38/ 8.27)	LHQSQQLDsQGNLN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.17|      15|      15|     285|     299|       3
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  285-  299 (27.31/14.91)	LQQELGM.GQQPSVQQ
  301-  316 (21.86/10.55)	LQISTGMfVQQNNIDK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.98|      16|      17|     361|     376|       4
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  361-  376 (28.37/16.65)	LKDQYFTEL.TDLYNEM
  380-  396 (26.61/15.21)	LQSHMPPQIpIDHYEEM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.59|      15|      23|     412|     434|       5
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  412-  431 (20.31/27.31)	IKKESIQPslwekIPEYERQ
  436-  450 (26.28/10.13)	ISSQRMQP.....VRKQEQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.21|      19|     123|     341|     359|       9
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  341-  359 (37.89/21.67)	QTGHPGECYLQDEIYDMIK
  467-  485 (36.32/20.49)	QQASPGSGDWQESSYQMIK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03477 with Med15 domain of Kingdom Viridiplantae
Unable to open file!