<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03471

Description Uncharacterized protein
SequenceMQRYTGAGHNAGFGGGVPGRGVVAGGREKGRLEPSSFHGANYPANLRRQPQVAPYKLKLGAPDFYPQTLSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQIPYLSKPDIATKCKEALKKRFRAINESRAQKRKAGQVYGVPLSGSLLTKPGMYPEQMHSNEDTRRKWIEALVQPNRRLWSLAEQVPRGFRRKSLFNYLIRYNVPLLRASWLVKVTYLNQVQTSSNNVSSAAPDSLRSQHWTKDVIEYLQLLLDELCSKNGFFGLPSSQEQSLPCLVAGDSPIKLKTGASPASADVEEPSLHFKWSYMIRIVQCHLMEQLLVPSLLIEWVFNQLQERDSTEVLELLLPIVLSLVDTITLSQTYIHMLVEILIQRLSDASPGSLSVKNNPKRSSITSALVELLQYLILAVPDTFVSLDCFPLPSVVAPDVYGKGALLKIAGGGKIASSRRQNASRHLSCGYAICSVQRRASDLSLVANPNLQVRGAANVVQALDKALVTGNLTAAYTSVFNYLSDTLMEETWIKEVSPCLRSSLMWMGAVELSLVCSVFFICEWATCTFRDCRTSQCQNVKFSGSKDFSQVYMAVSLLKDKMNEINNLSSSKSSSQLAMKDHLKSGTLNHSSIKVTAMETASGFRDSTGSIDENNKKDIFSSPGPLHDIIVCWLDQHEISDASGFKSVDVFMTELIRSGIFYPQTYVRQLIVSGITIWNDSLFDLENKTRHYKILKHLPGFCLFNILEEAKIAEDQVLYEIVSTYSSERRLVLSELSSGLATDANVEGRVPLSSCLQKQPDLLMDSTDDNHGRVAVQVEEVKLMISGREETKKTKKGQTDLVDSEEDVGHAKTGCKDSSRTKRQKLDKNVFPFQGSPLVQSDEEDFWWVRKEQKQELFTVETIHQSIEQTSGGKATVVQKTQNIAQLAAARIDGSQGASTSHVCDNNLSCPHHKPGTNSDILKDADHMSMLTLAEVGKSLKRLRLFERRSISIWLLKSIKQLIEGDEVKHSKANNSISASTVQHSGKIASGWRFGEDELLSVLYIMDTCCDLLSSVRLLIWLLSKIYIGMTTSGQVGRGVMHPKHKENQVFQVAEAFLFSSLLRYENILIAMDLLPEVLSVSMNRTVHKSGERQSTSVAFAYARYFLRKYRDVTSVARWERNFRSTSDKRLLAELDSGKSITGDSIISGISSDCIRQNGGANPDGDHSLVASAVSAIVDNAGHAVAKHLDISGGNNPGVTSINSLNLIQHILDIHINSLALLRETLGDRFSRIFEISLAVEASSAVAASFALPKAHRSQQSSETHDESGNHANEVPSNPSKCFNVKAVKVSAAVSALVVGAIIYGVVSLERMMVVLRLKEGLDILQFLRISKASTNGVTHSIGNFKIDSSTEVLVHWFKILIGNCKTVYNGVIAEILGDSYVLAFSRLQRTLPLGIVLPPAYSIFAMVLWRPYLYDTSTSNHEDIQLYQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDSEFAAIVELRSPDECLKALSPLRARVFLNALLDCEIPVTMRDDGTYALEPGCAEASTKNDVKFPERLIEILNVLQPAKFHWQWVELRLLLDEQSLIEKPKNVPYVKALRSLSPNAENFTLSEREKGLTEVILSRLLVRPDAAPLYSELIHLLGKLQESFVMGIKWFLQGQDVLLGNNSVRQQLVNLTQRKGFPMKTQFWKPWGWSKLVGYANANKSSKRKLEVTSIEEREVDGLIDSRKSSNSKSLNVGTSPEGHGSTQKYFTQEALAELVLPCIDRSSSEFRFVFAGDLIKHMGVISEHIKATVWNGINKLNSSNPSGNEGLSKPNGRKGIFSGSPNIRKHSPVPNDSTTPSASALRSSIWLRLQFIIRLLPVIIADSNMRQTLASSLLSLVGTRVVYEDADSLEPYMDDVLLDCPSESLFDRLLCVLHALLGNSQPSWLKTKPSSKPAVKFLRDLSAIDKEVTKSLQCALDRMELPATIRRRIQVAMPILPTSRLSSITCGPPLLSSAALSPFQCSTSTAGPHQQFPLNWIPTNLSSRCKAALPSQDPNMEIDPWTLLEDGTSCPNTNSGSNSANGVTGDHANLKACSFLKDSVRVRRTDLTYIGSLDEDS
Length2108
PositionKinase
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.182
Instability index47.83
Isoelectric point8.23
Molecular weight233468.18
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03471
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.00|      13|      15|    1123|    1136|       1
---------------------------------------------------------------------------
 1123- 1136 (19.67/15.30)	RQSTSVAfAYARYF
 1141- 1153 (25.33/14.37)	RDVTSVA.RWERNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.46|      19|      20|    1173|    1191|       2
---------------------------------------------------------------------------
 1173- 1191 (33.93/22.19)	GD.SIISGISSDCIRQNGGA
 1195- 1214 (26.53/15.53)	GDhSLVASAVSAIVDNAGHA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.02|      48|     625|      64|     118|       3
---------------------------------------------------------------------------
   64-  118 (76.71/70.66)	FYPQtlscaeeTLTKEYVQSG...YKDTVEGIEE.AREI.VLSQIPYLSKPDIATKCKEA
  691-  743 (73.31/51.75)	FYPQ.......TYVRQLIVSGitiWNDSLFDLENkTRHYkILKHLPGFCLFNILEEAKIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.98|      12|      15|     819|     830|       4
---------------------------------------------------------------------------
  819-  830 (19.30/14.78)	EETKKTKKGQTD
  836-  847 (20.68/16.53)	EDVGHAKTGCKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.52|      13|      15|    1356|    1370|       5
---------------------------------------------------------------------------
 1356- 1370 (14.29/22.36)	QFlRIsKASTNGVTH
 1374- 1386 (22.23/17.38)	NF.KI.DSSTEVLVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.97|      39|      55|    1490|    1528|       8
---------------------------------------------------------------------------
 1490- 1528 (64.67/42.91)	AADVGDSEFAAIVELRSPD...ECLKALSPLRAR...VFLNALLD
 1542- 1586 (53.30/33.92)	ALEPGCAEASTKNDVKFPErliEILNVLQPAKFHwqwVELRLLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.37|      17|     625|    1295|    1342|      11
---------------------------------------------------------------------------
 1269- 1285 (26.71/45.69)	AVEASSAVAA.........SFALPKA
 1317- 1342 (18.65/16.95)	AVKVSAAVSAlvvgaiiygVVSLERM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.14|      10|      22|    1029|    1038|      12
---------------------------------------------------------------------------
 1029- 1038 (18.74/13.09)	LLSVLYI.MDT
 1052- 1062 (14.40/ 8.13)	LLSKIYIgMTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.82|      17|      23|     575|     596|      13
---------------------------------------------------------------------------
  575-  596 (26.07/35.40)	SKDFSQVYMavsllKD..KMNEIN
  601-  619 (24.74/18.30)	SKSSSQLAM.....KDhlKSGTLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.95|      11|      15|     889|     899|      17
---------------------------------------------------------------------------
  889-  899 (18.77/13.40)	TVETIHQSIEQ
  906-  916 (18.18/12.73)	TVVQKTQNIAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.94|      12|      23|    1704|    1715|      20
---------------------------------------------------------------------------
 1704- 1715 (20.81/11.65)	GYANANKSSKRK
 1728- 1739 (20.13/11.02)	GLIDSRKSSNSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03471 with Med12 domain of Kingdom Viridiplantae
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