<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03465

Description Uncharacterized protein
SequenceMCIFSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPTNLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSSNLKTFEEKFLTQQPQSSAGWPNILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPPLWAGFAPLASYLFSLQDYLVSEGAQTKKQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPTQTVWSTRVNKSIPPSEDLKNPQSYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFEQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTTGSSQMQEWVQGAIAKISNNTDGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKSSDSSMQKQHLMNSKTEDNTLAVRSGLGAAKLEDGTTSRGQMIGAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPSSQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNTRQLKINGSTNRHLSDMEEDGDSSFGIQNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLEGEWYKPGALAPNTSNELEAWWISRWTHACPMCGGTWVKVV
Length1128
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.203
Instability index47.06
Isoelectric point6.33
Molecular weight122326.80
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03465
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     374.40|     101|     115|     687|     789|       1
---------------------------------------------------------------------------
  233-  297 (55.39/28.49)	........................................TSSLP.PSLNPPLWAGfapLASYL..FSLQDYLvsEGAqtkkQAQVDNETTEVASIHCCPVSNFSAYV.......
  687-  789 (168.63/113.63)	HFITRLRRYASFC...RTLASHAVGASSGSGNSRNMVTSPTNSSPsPSTNQGNQGG...VASTTGSSQMQEWV..QGA....IAKISNNTDGAANAAPNPISGRSSFMPiSINTG
  804-  899 (150.38/93.10)	HFLHRLCQLLLFCllfRRRQSPRIPANAQKSSDSSMQKQHLMNSK...TED.NTLA...VRSGLGAAKLED.....GT....TSR..GQMIGAKGAEENPVGNKSARIG.SGNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.95|      22|      30|     438|     467|       4
---------------------------------------------------------------------------
  438-  464 (31.10/32.39)	PNdvrqLAQiVYSAH...GGEVA.VAFLRGG
  471-  496 (32.85/12.75)	PN....FEQ.VDSYHvnvGSAIApPAFSSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.87|      31|     338|     631|     676|       7
---------------------------------------------------------------------------
  401-  431 (57.21/23.38)	LKNPQSYVPMP..TTSDERSS...SECSVDRANRLS
  638-  673 (44.66/33.45)	LINPSTLLPEPwqASSDMLSSigpDKMTVDPALLLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.09|      31|     603|     359|     399|       8
---------------------------------------------------------------------------
  327-  357 (57.05/30.18)	SVITVVIVEGQYMSPYD.PDEGPSITGWRVQC
  360-  391 (52.03/41.02)	SSVQPVVLHPIFGSPANfGGQPPTQTVWSTRV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.73|      25|     530|      54|      79|       9
---------------------------------------------------------------------------
   54-   79 (42.96/35.10)	ALLVANFHGRITIWTQPTKGPtNLVR
  576-  600 (49.77/35.74)	ALLDADFHCLPTIQQRQQHCP.NLDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.01|      10|     528|     544|     554|      10
---------------------------------------------------------------------------
  544-  554 (20.70/10.67)	WWSLLAGvDWW
 1083- 1092 (21.30/ 7.47)	WKTGLEG.EWY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03465 with Med16 domain of Kingdom Viridiplantae
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