<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03464

Description Uncharacterized protein
SequenceMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPTNLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSSNLKTFEEKFLTQQPQSSAGWPNILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPPLWAGFAPLASYLFSLQDYLVSEGAQTKKQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPTQTVWSTRVNKSIPPSEDLKNPQSYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFEQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTTGSSQMQEWVQGAIAKISNNTDGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKSSDSSMQKQHLMNSKTEDNTLAVRSGLGAAKLEDGTTSRGQMIGAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPSSQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNTRQLKINGSTNRHLSDMEEDGDSSFGIQNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLEGEWYKPGALAPNTSNELEAWWISRWTHACPMCGGTWVKVV
Length1157
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.197
Instability index46.90
Isoelectric point6.49
Molecular weight125396.35
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03464
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     374.40|     101|     115|     716|     818|       1
---------------------------------------------------------------------------
  262-  326 (55.39/29.30)	........................................TSSLP.PSLNPPLWAGfapLASYL..FSLQDYLvsEGAqtkkQAQVDNETTEVASIHCCPVSNFSAYV.......
  716-  818 (168.63/116.82)	HFITRLRRYASFC...RTLASHAVGASSGSGNSRNMVTSPTNSSPsPSTNQGNQGG...VASTTGSSQMQEWV..QGA....IAKISNNTDGAANAAPNPISGRSSFMPiSINTG
  833-  928 (150.38/95.72)	HFLHRLCQLLLFCllfRRRQSPRIPANAQKSSDSSMQKQHLMNSK...TED.NTLA...VRSGLGAAKLED.....GT....TSR..GQMIGAKGAEENPVGNKSARIG.SGNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.05|      41|     234|     422|     464|       2
---------------------------------------------------------------------------
  422-  464 (72.16/48.52)	KSIPPSedLKNPQSYVPMP..TTSDERSS...SECSVDRANRLSFDPY
  661-  706 (61.89/35.51)	KGIESA..LINPSTLLPEPwqASSDMLSSigpDKMTVDPALLLSIQGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.87|      29|     115|     216|     244|       3
---------------------------------------------------------------------------
  216-  244 (51.27/32.76)	AADAIITET...GALHVAGVPLVNPS..TVVVWE
  331-  364 (39.61/23.54)	AAQSATTTTwgsGVTSVAFDPTRGGSviTVVIVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.95|      22|      30|     467|     496|       5
---------------------------------------------------------------------------
  467-  493 (31.10/31.91)	PNdvrqLAQiVYSAH...GGEVA.VAFLRGG
  500-  525 (32.85/12.58)	PN....FEQ.VDSYHvnvGSAIApPAFSSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.39|      43|     234|     133|     175|       6
---------------------------------------------------------------------------
  133-  175 (78.99/48.42)	ISPYRWLPANSSTSSNLKTFEEKF.......LTQQPQSSAGWPNILCVCS
  368-  417 (77.40/47.27)	MSPYDPDEGPSITGWRVQCWESSVqpvvlhpIFGSPANFGGQPPTQTVWS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.73|      25|     530|      83|     108|       7
---------------------------------------------------------------------------
   83-  108 (42.96/29.83)	ALLVANFHGRITIWTQPTKGPtNLVR
  605-  629 (49.77/30.37)	ALLDADFHCLPTIQQRQQHCP.NLDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.07|      31|     530|     552|     583|       8
---------------------------------------------------------------------------
  552-  583 (53.23/31.12)	ILNAQTKVSSAVWERAIADRfWW...SLLAGVD.....WW
 1100- 1138 (47.83/23.45)	VMGSRRDVITAVWKTGLEGE.WYkpgALAPNTSneleaWW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03464 with Med16 domain of Kingdom Viridiplantae
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