<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03463

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQEQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTSDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
Length1030
PositionUnknown
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.835
Instability index61.25
Isoelectric point7.60
Molecular weight111561.62
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03463
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.23|      27|      27|      60|      86|       1
---------------------------------------------------------------------------
   64-   90 (50.07/15.72)	SGPAAPSMPANPASPAT.....PG.PPRP......qF.AG
  160-  196 (32.08/ 7.40)	AFPGAGAMPPNP..PGSirlpfPG.PPRPsintfvaSPQQ
  309-  341 (31.09/ 6.94)	QQPGQQQL..YPSYPSA.....HGvQPQPlwgyppqPTGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     212.96|      43|      43|     808|     850|       2
---------------------------------------------------------------------------
  676-  722 (33.60/20.42)	......................RFKAIpSHSRRRSTFEQ...............YVrtrADEERKEKRAAQRAaveayKQLLEE
  723-  795 (32.25/19.26)	ASEdinsnkdYKefkrkwgtdpRFEAL.DRKERDALFNEkvksieekvqsvrnaVI...AEFKSMLRESKDIT.....ST..SR
  796-  845 (63.51/46.01)	WTK.......VK...enfrsdaRYKAM.KHEEREVAFNE...............YI...AELKSAEKEAEQAA.....KAKLDE
  846-  889 (48.81/33.42)	QAK.......LK.........eREREMrKRKEREEQEME...............RV....KLKIRRKEAVSSY.....QALLVE
  969- 1008 (34.79/21.43)	WTE.......AK...gllrsdpRYNKL.ASKDRESIWRR...............YA...DDMATKLKQS...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     226.36|      48|      49|     511|     558|       3
---------------------------------------------------------------------------
  392-  429 (50.16/20.65)	ANPG....SEQPTQQ.GS.QNSDQLE.DKRTT..AIQDS.....DSWSAHKT.
  511-  558 (78.38/36.26)	AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG...RDSLPLRQTV
  561-  609 (48.93/19.97)	ASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNGsktTDAAPMGHQV
  620-  661 (48.90/19.95)	SGDGNMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..E...RGVLPF....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.66|      25|     116|     236|     260|       4
---------------------------------------------------------------------------
  222-  246 (39.60/13.20)	SVPEASPQTMQLSTGPP.....STSTAGSP
  247-  276 (35.51/10.99)	SITVQMPTNPSLPTRPEvfgavGASVPGQP
  366-  385 (26.54/ 6.15)	SVTAYLPS.....IQPP.....GVSTSDRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     126.60|      23|     165|     277|     299|       5
---------------------------------------------------------------------------
   92-  129 (29.33/10.19)	PAYASPPapafsynvlPRPSPRPQVGSgaaqqqlASP.P
  137-  151 (27.85/ 9.22)	VSRF.VP.........PSSL.QP.............PAP
  277-  299 (44.26/19.95)	STILSAP.........PSLLGRPMTPS.......ASPFP
  449-  465 (25.15/ 7.45)	......P.........PGYKGEPEKVA.......AQPVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.19|      20|     115|     893|     912|       6
---------------------------------------------------------------------------
  893-  912 (38.53/20.70)	DPK.ASWTESKPRLEKDPQGR
 1009- 1029 (32.67/16.31)	DTKeKSDTDGKQRRSSDPPRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.38|      17|     144|     199|     216|       8
---------------------------------------------------------------------------
   14-   30 (28.71/13.51)	PEAAEVPSAAPASE.SEG
  199-  216 (25.66/15.68)	PQASQLPSNSGSSDvSTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03463 with Med35 domain of Kingdom Viridiplantae
Unable to open file!