<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03463

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQEQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTSDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
Length1030
PositionUnknown
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.835
Instability index61.25
Isoelectric point7.60
Molecular weight111561.62
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03463
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.23|      27|      27|      60|      86|       1
---------------------------------------------------------------------------
   64-   90 (50.07/15.72)	SGPAAPSMPANPASPAT.....PG.PPRP......qF.AG
  160-  196 (32.08/ 7.40)	AFPGAGAMPPNP..PGSirlpfPG.PPRPsintfvaSPQQ
  309-  341 (31.09/ 6.94)	QQPGQQQL..YPSYPSA.....HGvQPQPlwgyppqPTGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     212.96|      43|      43|     808|     850|       2
---------------------------------------------------------------------------
  676-  722 (33.60/20.42)	......................RFKAIpSHSRRRSTFEQ...............YVrtrADEERKEKRAAQRAaveayKQLLEE
  723-  795 (32.25/19.26)	ASEdinsnkdYKefkrkwgtdpRFEAL.DRKERDALFNEkvksieekvqsvrnaVI...AEFKSMLRESKDIT.....ST..SR
  796-  845 (63.51/46.01)	WTK.......VK...enfrsdaRYKAM.KHEEREVAFNE...............YI...AELKSAEKEAEQAA.....KAKLDE
  846-  889 (48.81/33.42)	QAK.......LK.........eREREMrKRKEREEQEME...............RV....KLKIRRKEAVSSY.....QALLVE
  969- 1008 (34.79/21.43)	WTE.......AK...gllrsdpRYNKL.ASKDRESIWRR...............YA...DDMATKLKQS...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     226.36|      48|      49|     511|     558|       3
---------------------------------------------------------------------------
  392-  429 (50.16/20.65)	ANPG....SEQPTQQ.GS.QNSDQLE.DKRTT..AIQDS.....DSWSAHKT.
  511-  558 (78.38/36.26)	AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG...RDSLPLRQTV
  561-  609 (48.93/19.97)	ASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNGsktTDAAPMGHQV
  620-  661 (48.90/19.95)	SGDGNMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..E...RGVLPF....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.66|      25|     116|     236|     260|       4
---------------------------------------------------------------------------
  222-  246 (39.60/13.20)	SVPEASPQTMQLSTGPP.....STSTAGSP
  247-  276 (35.51/10.99)	SITVQMPTNPSLPTRPEvfgavGASVPGQP
  366-  385 (26.54/ 6.15)	SVTAYLPS.....IQPP.....GVSTSDRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     126.60|      23|     165|     277|     299|       5
---------------------------------------------------------------------------
   92-  129 (29.33/10.19)	PAYASPPapafsynvlPRPSPRPQVGSgaaqqqlASP.P
  137-  151 (27.85/ 9.22)	VSRF.VP.........PSSL.QP.............PAP
  277-  299 (44.26/19.95)	STILSAP.........PSLLGRPMTPS.......ASPFP
  449-  465 (25.15/ 7.45)	......P.........PGYKGEPEKVA.......AQPVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.19|      20|     115|     893|     912|       6
---------------------------------------------------------------------------
  893-  912 (38.53/20.70)	DPK.ASWTESKPRLEKDPQGR
 1009- 1029 (32.67/16.31)	DTKeKSDTDGKQRRSSDPPRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.38|      17|     144|     199|     216|       8
---------------------------------------------------------------------------
   14-   30 (28.71/13.51)	PEAAEVPSAAPASE.SEG
  199-  216 (25.66/15.68)	PQASQLPSNSGSSDvSTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03463 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVK
2) AGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFK
3) APAFSYNVLPRPSPRPQVGSGAAQQQLASPPGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQEQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMV
4) ELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAP
5) MATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYA
6) SSSVTAYLPSIQPPGVSTSDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSW
7) YADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
835
576
99
506
1
364
997
871
649
362
560
95
424
1030










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYD
2) KIVFDPRFKAI
3) LDLIKKKLQ
4) SIWRRYADDMATKLKQS
5) VVAAATTPAVVDSA
6) YYYNAL
484
670
566
992
36
435
490
680
574
1008
49
440