<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03462

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPVKYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQEQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTSDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
Length1079
PositionUnknown
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.796
Instability index60.98
Isoelectric point8.02
Molecular weight116691.41
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03462
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     352.88|      41|      43|     302|     342|       1
---------------------------------------------------------------------------
   41-   69 (34.81/ 7.43)	.T..TPAV.....V...DS...AV..EGD..AP...A..A.......P.....APTSGSG.PAAP
   72-  106 (40.32/ 9.75)	PA..NPASPATP..............GPP..RPqfaG..S.......PA.YASPPAPAFSYNV..
  163-  206 (35.16/ 7.58)	HA..NAGLPTGQQFqldTGtnhAV..QVSrfVP..............PSSLQPPAPMNLAR...P
  211-  234 (41.45/10.23)	PG..AGAMPPNPP.....G...SI..RLP..FP...G.................PP.......RP
  302-  342 (76.58/25.04)	PT..NPSLPTRPEV...FG...AV..GAS..VP...G..Q.......PSTILSAPPSLLGRPMTP
  346-  387 (52.43/14.86)	PF...PQTSQSPTA...FQ...Q.........P...G..QqqlypsyPSAHGVQPQPLWGYPPQP
  421-  465 (38.08/ 8.81)	PSiqPPGVSTSDRD...SK...EL..SSA..NP...GseQ.......PTQQGSQNSDQLEDKRTT
  468-  505 (34.05/ 7.11)	QD..SDSWSAHKTE...AG...VVyyYNA..LT...G..E........ST.YQKPPGYKGEP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     193.56|      48|      49|     560|     607|       2
---------------------------------------------------------------------------
  560-  607 (77.46/37.26)	AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG...RDSLPLRQTV
  610-  658 (56.58/25.37)	ASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNGsktTDAAPMGHQV
  669-  710 (59.52/27.04)	SGDGNMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..E...RGVLPF....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     213.49|      43|      43|     857|     899|       3
---------------------------------------------------------------------------
  725-  771 (34.52/15.31)	........................RFKAI.PsHSRRRSTFEQ...............YVrtrADEERKEKRAAQRAaveayKQLLEE
  772-  844 (31.65/13.52)	ASE..dinsnkdykefkrkwgtdpRFEAL.D.RKERDALFNEkvksieekvqsvrnaVI...AEFKSMLRESKDIT.....ST..SR
  845-  894 (63.59/33.46)	WTKVK............enfrsdaRYKAM.K.HEEREVAFNE...............YI...AELKSAEKEAEQAA.....KAKLDE
  895-  938 (48.88/24.28)	QAKLK..................eREREMrK.RKEREEQEME...............RV....KLKIRRKEAVSSY.....QALLVE
 1018- 1057 (34.84/15.51)	WTEAK............gllrsdpRYNKL.A.SKDRESIWRR...............YA...DDMATKLKQS...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.19|      20|     116|     942|     961|       4
---------------------------------------------------------------------------
  942-  961 (38.53/20.77)	DPK.ASWTESKPRLEKDPQGR
 1058- 1078 (32.67/16.39)	DTKeKSDTDGKQRRSSDPPRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.07|      14|     116|     285|     298|       9
---------------------------------------------------------------------------
  285-  298 (26.53/13.32)	GPPSTSTAGSPSIT
  404-  417 (26.53/13.32)	GPLGRPMVGSSSVT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03462 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVK
2) AGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFK
3) AGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQEQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMV
4) APAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAA
5) ELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAP
6) MATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYA
7) SSSVTAYLPSIQPPGVSTSDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSW
8) YADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
884
625
166
99
555
1
413
1046
920
698
411
138
609
95
473
1079










Molecular Recognition Features






MoRF SequenceStartStop




1) DGKKYYYD
2) KIVFDPRFKAI
3) LDLIKKKLQ
4) SIWRRYADDMATKLKQS
5) VPVKYF
6) VVAAATTPAVVDS
7) YYYNAL
532
719
615
1041
145
36
484
539
729
623
1057
150
48
489