<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03462

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPVKYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQEQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTSDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
Length1079
PositionUnknown
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.796
Instability index60.98
Isoelectric point8.02
Molecular weight116691.41
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03462
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     352.88|      41|      43|     302|     342|       1
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   41-   69 (34.81/ 7.43)	.T..TPAV.....V...DS...AV..EGD..AP...A..A.......P.....APTSGSG.PAAP
   72-  106 (40.32/ 9.75)	PA..NPASPATP..............GPP..RPqfaG..S.......PA.YASPPAPAFSYNV..
  163-  206 (35.16/ 7.58)	HA..NAGLPTGQQFqldTGtnhAV..QVSrfVP..............PSSLQPPAPMNLAR...P
  211-  234 (41.45/10.23)	PG..AGAMPPNPP.....G...SI..RLP..FP...G.................PP.......RP
  302-  342 (76.58/25.04)	PT..NPSLPTRPEV...FG...AV..GAS..VP...G..Q.......PSTILSAPPSLLGRPMTP
  346-  387 (52.43/14.86)	PF...PQTSQSPTA...FQ...Q.........P...G..QqqlypsyPSAHGVQPQPLWGYPPQP
  421-  465 (38.08/ 8.81)	PSiqPPGVSTSDRD...SK...EL..SSA..NP...GseQ.......PTQQGSQNSDQLEDKRTT
  468-  505 (34.05/ 7.11)	QD..SDSWSAHKTE...AG...VVyyYNA..LT...G..E........ST.YQKPPGYKGEP...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     193.56|      48|      49|     560|     607|       2
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  560-  607 (77.46/37.26)	AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG...RDSLPLRQTV
  610-  658 (56.58/25.37)	ASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNGsktTDAAPMGHQV
  669-  710 (59.52/27.04)	SGDGNMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..E...RGVLPF....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     213.49|      43|      43|     857|     899|       3
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  725-  771 (34.52/15.31)	........................RFKAI.PsHSRRRSTFEQ...............YVrtrADEERKEKRAAQRAaveayKQLLEE
  772-  844 (31.65/13.52)	ASE..dinsnkdykefkrkwgtdpRFEAL.D.RKERDALFNEkvksieekvqsvrnaVI...AEFKSMLRESKDIT.....ST..SR
  845-  894 (63.59/33.46)	WTKVK............enfrsdaRYKAM.K.HEEREVAFNE...............YI...AELKSAEKEAEQAA.....KAKLDE
  895-  938 (48.88/24.28)	QAKLK..................eREREMrK.RKEREEQEME...............RV....KLKIRRKEAVSSY.....QALLVE
 1018- 1057 (34.84/15.51)	WTEAK............gllrsdpRYNKL.A.SKDRESIWRR...............YA...DDMATKLKQS...............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.19|      20|     116|     942|     961|       4
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  942-  961 (38.53/20.77)	DPK.ASWTESKPRLEKDPQGR
 1058- 1078 (32.67/16.39)	DTKeKSDTDGKQRRSSDPPRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.07|      14|     116|     285|     298|       9
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  285-  298 (26.53/13.32)	GPPSTSTAGSPSIT
  404-  417 (26.53/13.32)	GPLGRPMVGSSSVT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03462 with Med35 domain of Kingdom Viridiplantae
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