<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03461

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPVKYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQEQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTSDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPADAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMATKLKQSDTKEKSDTDGKQRRSSDPPRRR
Length1048
PositionUnknown
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.810
Instability index60.57
Isoelectric point6.84
Molecular weight113430.67
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03461
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     352.88|      41|      43|     302|     342|       1
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   41-   69 (34.81/ 7.19)	.T..TPAV.....V...DS...AV..EGD..AP...A..A.......P.....APTSGSG.PAAP
   72-  106 (40.32/ 9.42)	PA..NPASPATP..............GPP..RPqfaG..S.......PA.YASPPAPAFSYNV..
  163-  206 (35.16/ 7.33)	HA..NAGLPTGQQFqldTGtnhAV..QVSrfVP..............PSSLQPPAPMNLAR...P
  211-  234 (41.45/ 9.88)	PG..AGAMPPNPP.....G...SI..RLP..FP...G.................PP.......RP
  302-  342 (76.58/24.11)	PT..NPSLPTRPEV...FG...AV..GAS..VP...G..Q.......PSTILSAPPSLLGRPMTP
  346-  387 (52.43/14.33)	PF...PQTSQSPTA...FQ...Q.........P...G..QqqlypsyPSAHGVQPQPLWGYPPQP
  421-  465 (38.08/ 8.51)	PSiqPPGVSTSDRD...SK...EL..SSA..NP...GseQ.......PTQQGSQNSDQLEDKRTT
  468-  505 (34.05/ 6.88)	QD..SDSWSAHKTE...AG...VVyyYNA..LT...G..E........ST.YQKPPGYKGEP...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     290.42|      38|      68|     915|     952|       2
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  682-  715 (45.09/25.71)	.WEKELPKIVFDPRFKAI.PSHSR...RRSTFEQYVRTR
  750-  783 (48.49/28.26)	DYKEFKRKWGTDPRFEAL..DRKE.RDA..LFNEKVKSI
  813-  846 (50.66/29.89)	RWTKVKENFRSDARYKAMKHE.....EREVAFNEYIAEL
  853-  889 (32.33/16.13)	AEQAAKAKLDEQAKLKEREREMRKrKEREEQEMERVK..
  915-  952 (60.12/36.99)	SWTESKPRLEKDPQGRAVNPDLGK.GDAEKLFRDHVKDL
  986- 1019 (53.74/32.20)	SWTEAKGLLRSDPR....YNKLAS.KDRESIWRRYADDM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.29|      25|     232|       7|      40|       3
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    9-   33 (41.91/12.05)	SDATN.PEAAEVP...SAAPASESEGPFD
  267-  295 (34.38/ 6.32)	SDTRSvPEASPQTmqlSTGPPSTSTAGSP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.42|      21|      49|     550|     570|       4
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  550-  570 (34.57/15.96)	PPEV......AELIKNAESGPLKGSST
  591-  617 (23.85/ 8.60)	PADAgassvpSPLATPSSASELNGSKT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.65|      26|      60|     721|     747|       6
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  721-  747 (39.08/34.11)	KEKRAAQRAAVEA.YKQLLEEaSEDINS
  784-  810 (39.58/29.07)	EEKVQSVRNAVIAeFKSMLRE.SKDITS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.26|      14|      18|     619|     636|      12
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  619-  636 (19.50/17.23)	DAAPMGHqvsiSGEKSKD
  639-  652 (24.76/12.03)	GDGNMSD....SSSNSDD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03461 with Med35 domain of Kingdom Viridiplantae
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