<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03458

Description Uncharacterized protein
SequenceMAVASARSSLPSSSSSPLPPLSPQPVVPAGVERMLVRAGGGTRSLREIDEEEDDDDDCGGKTYVSVGKDLKDGKANIQWAARKLQPQQGDVNKLLVLLHVHQPADRIMSGLCKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLSYCRAFPKVQAEKLVIEKNSVANGIVELIDQHHITKLVMGTSSFSVKRQVPKSKVAAIVHQQAKPYCQILYICKEALACTREASQFADKGDSPRSSSGSSLSDKSEFPPRSVSLPSWYSGFLGSPDQQSLPRRSNSISHPFPFSRQLENGVENISPIRPNSVDVAPKGCSPNSSHQSKGSSPTLTDLDTVDGLSVPVSSSSSEEHQHFMVEANMQNEMFEQWQQVRNELERSRKEASEGRQKAEKELFEASKMFRARENSLCKEKIAVEERLTREKVSLEKEHLQIYNELQKANEQIMELERKLMHANSLMEELQTVQGELQRQKDNAVKEAEKMSQINCNNVSCSTGAVALTEFTYTEIKEATNDFDESKMIGHGGCGSVYKGFLRHTTVAIKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKGIAHGDLKPDNILLGDNFVGKLGDFGISRPLNLTNTTITPYHRTNQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCRYDRKERPDLAKEAWGVLQAMVNYPDKKCKIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKTSPMTYLSFTYYELIPNNALPMATAGSPSPYPGDSPEPSFSGEKVYVAVGEESSRGTLLWALHKFPQGTAFVLLHVYSPPNFLPILGAKIPAGQLREQELIAHKKMNLQRISDNLDQYQLICAQQKVQAEKLVVESDDVAYGLVDVISEHNVSMLVMGAADDKHYTKKAAPFGHDVMQDCRQSATSAQCSVERSSSLSEIWCVSNTWLHKLNLEPHIETTSSDRYSDKEKEDTKERGESDNELQHIPMQLERVRQEAYEEKCRREKAEQELFEALQKVSENLYFGELKQKNEIEVKLATTMEEVDRLARTADELAAKFQEQCEKILVLEKRSAHSDRIIKDLMLQRDKAVREAEAIRVKNGESTAIADRTIPITELSISEIKEATSNFDHSSKVGESVYGSVYKGLLRQTNVAVKKLNPESTESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMLTDEFKATTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEVWTVLEPMLRSASSMLCSLSFKSVSEDFGNVPSYFICPIQQDVMRDPLIAADGFTYEAEAIREWFDSGHYTSPMTNLDLPHPKPPGEQEFCESNVQGKRRMRAKCRITIQLHYIADRPGRYIQDFTANLPKRGQEKMDEEEIHIAVGKNFRKEKANILWAAARFPRATIVLVHVHWPSKWMPFMGGKVLYKFADEKEKEMHRAKETDAMVKMLSQYKNLCGSRKVRAHYLSHDDVLAGVVNLIKKLKIKRIIIGSRSMSKEAMLRKCCQVWVVINGKHINDHLEHTGSIGYGGSAESLASVHELSDDSNGYTTPPSDFADEIMYDDGVIQMDGADELATETETEDEESIETGELNSYEEEGEHSSGETAHRTDEIQSFRSITERAEELMEEIDKLQRKLKELQEEDDRSILSPRQKAAAASLKKEKRLSTGRYPELQLPQHISRFSMSMISKATGNFCSGNLIGEGGYGPVYKGKLGGVAVAIKLLRPHGRQGFPEYKQEVVVLSRMEHPHIVRLMGVCPESCGLVYEHLPNGTLLDTLSNSKSLSWKDRVRILGEQRSALAYLHSCRPHAIIHADLKLTNILLDAANSSRLGDFGTARAVHVKPLQDQADTICRRTNPMGTTGYMDPVFFVTGELTAESDVYAFGVVVLQVLTGLLDLNIADQVREALKMDAVHSVLDASAGSWPEVQAEKLLRLALRCCSLERKRRPAITCDAEWRSLDIMLRMANSPSKSRKWTSISIHAT
Length2215
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.449
Instability index46.34
Isoelectric point6.35
Molecular weight248145.78
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03458
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     157.10|      22|     254|     580|     602|       1
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  580-  601 (43.50/23.85)	YEFLPNGSLEDRLQCKHQTDPL
  837-  856 (34.07/16.04)	YELIPNNALP..MATAGSPSPY
 1283- 1304 (45.17/25.24)	YEYMPNGSLDDRLACKDNSKPL
 1998- 2016 (34.37/16.29)	YEHLPNGTLLDTLS...NSKSL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     137.50|      29|      30|     360|     388|       2
---------------------------------------------------------------------------
  358-  376 (26.66/13.18)	.............QNEMFEQWQQVR...NELERSR
  377-  407 (41.05/24.53)	KEASEG...RQKAEKELFEASKMFRareNSLCK.E
 1055- 1079 (39.94/23.65)	KEDTKE...RGESDNEL....QHIP...MQLERVR
 1080- 1107 (29.85/15.70)	QEAYEEkcrREKAEQELFEALQKVS...ENL....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|    1906.86|     589|     713|     502|    1213|       3
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   59-  210 (35.59/ 8.71)	............G..........................................GKTYVSVGKDlkDGKANIQWAARKLqPqQGDVnklLVLLHVHQPADRI.MSGlCKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLSYCrAFPKVQAEKLVIEKNSVANGIVELIDQHHITKLVMGTS..SFSVKRQVP.KSKVAAIVHQQA.KPYC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  408-  836 (598.77/471.70)	........................................................................................................................................................................................................................................................................................................................qilyickealactreasqfadkgdsprsssgsslsdksefpprsvslpswysgflgspdqqslprrsnsishpfpfsrqlengvenispirpnsvdvapkgcspnsshqskgssptltdldtvdglsvpvssssseehqhfmveanmqnemfeqwqqvrnelersrkeasegrqkaekelfeaskmfrarenslckeKIAVEERL..T....................REKVS.LEKEHLQIYNELQKANEQIMELERKLMHANSLMEELQtvqgeLQRqkDNAVKEAEKMSQINCN..NVS.CSTGAVA..LTE............FtyteikeatndfdESKMIGHGGCGSVYKGFLRHTTVAIKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVyeflpngsledrlqckhqtdplPWRMRIKIAADICTALIFLHSNKPKGIAHGDLKPDNILLGDNFVGKLGDFGISRPLN...LTNTTITPYHRTNQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCRYDRKERPDLAKEA.WGVLQAMV...NYPDKK.C............KIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKTSPMTYLSFTY
  857- 1054 (117.75/804.48)	PGDSP..EPSFSG..........................................EKVYVAVGEE..SSRGTLLWALHKF.P.QGTA...FVLLHVYSPPNFLPILG.AKIPAGQLREQELIAHKKMNLQRISDNLDQYQLIC.AQQKVQAEKLVVESDDVAYGLVDVISEHNVSMLVMGAAddKHYTKKAAPfGHDVMQDCRQSAtSAQCsverssslseIWCVSNtwlHKlNLEPHIETTSSDRYSDKE...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1108- 1552 (631.98/53.19)	............................................................................................................................................................................................................................................................kedtkergesdnelqhipmqlervrqeayeekcrrekaeqelfealqkvsenlYFGELKQ.....................................................................................................................................................................................................KNEIEVKLATT....................MEEVDRLARTADELAAKFQEQCEKILVLEKRSAHSDRIIKDLM.....LQR..DKAVREAEAIRVKNGE..STA.IADRTIP..ITELSISEIKEATSNF............dHSSKVGESVYGSVYKGLLRQTNVAVKKLNPESTESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVyeympngslddrlackdnskplSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMLT...DEFKATTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEV.WTVLEPML...RSASSMlCslsfksvsedfgNVPSYFICPIQQDVMRDPLIAADGFTYEAEAIREWFDSGHYTSPMTNLDLPH
 1556- 1766 (86.44/326.38)	PGEQEfcESNVQGkrrmrakcritiqlhyiadrpgryiqdftanlpkrgqekmdeEEIHIAVGKNfrKEKANILWAAARF.P.RAT....IVLVHVHWPSKWMPFMG.GKVLYKFADEKEKEMHRAKETDAMVKMLSQYKNLC.GSRKVRAHYL..SHDDVLAGVVNLIKKLKIKRIIIGS...RSMSKEA......MLRKCCQ.................VWVVIN...GK.HINDHLEHTGSIGYGGSA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1821- 2212 (436.33/ 0.00)	...........................................................................................................................................................................................................................................................eslasvhelsddsngyttppsdfadeimyddgviqmdgadelatetetedeesiETGELNS....................................................................................................................................................................................................yEEEGEHSSGETahrtdeiqsfrsiteraeelMEEIDKLQRKLKEL....QEE.............DDR...SIL.....SPR..QK....AAAASLKKEKrlSTGrYPELQLPqhISRFSMSMISKATGNF............cSGNLIGEGGYGPVYKGKLGGVAVAIKLLRPHGRQGFPEYKQEVVVLSRMEHPHIVRLMGVCPESCGLV...yehlpngtlldtlsnskslSWKDRVRILGEQRSALAYLHSCRPHAIIHADLKLTNILLDAANSSRLGDFGTARAVHvkpLQDQADTICRRTNPM.GTTGYMDPVFFVTGELTAESDVYAFGVVVLQVLTGLLDLNIADQVREALKMDAVHSVLDASAGSWPEVQAEKLLRLALRCCSLERKRRPAITCDAeWRSLDIMLrmaNSPSKS.R............KWTSISI.............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.91|      23|     262|       7|      32|       4
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    7-   32 (33.60/24.74)	RSSLPSSSSS...PLpPLSPQpvVPAGVE
  270-  295 (39.30/18.20)	QQSLPRRSNSishPF.PFSRQ..LENGVE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03458 with Med32 domain of Kingdom Viridiplantae
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