<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03457

Description Uncharacterized protein
SequenceMKDDTCRKLPRLPNVFISQSIISYLSSTEAVNLSCLRCMAVASARSSLPSSSSSPLPPLSPQPVVPAGVERMLVRAGGGTRSLREIDEEEDDDDDCGGKTYVSVGKDLKDGKANIQWAARKLQPQQGDVNKLLVLLHVHQPADRIMSGLCKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLSYCRAFPKVQAEKLVIEKNSVANGIVELIDQHHITKLVMGTSSFSVKRQVPKSKVAAIVHQQAKPYCQILYICKEALACTREASQFADKGDSPRSSSGSSLSDKSEFPPRSVSLPSWYSGFLGSPDQQSLPRRSNSISHPFPFSRQLENGVENISPIRPNSVDVAPKGCSPNSSHQSKGSSPTLTDLDTVDGLSVPVSSSSSEEHQHFMVEANMQNEMFEQWQQVRNELERSRKEASEGRQKAEKELFEASKMFRARENSLCKEKIAVEERLTREKVSLEKEHLQIYNELQKANEQIMELERKLMHANSLMEELQTVQGELQRQKDNAVKEAEKMSQINCNNVSCSTGAVALTEFTYTEIKEATNDFDESKMIGHGGCGSVYKGFLRHTTVAIKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKGIAHGDLKPDNILLGDNFVGKLGDFGISRPLNLTNTTITPYHRTNQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCRYDRKERPDLAKEAWGVLQAMVNYPDKKCKIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKTSPMTYLSFTYYELIPNNALPMATAGSPSPYPGDSPEPSFSGEKVYVAVGEESSRGTLLWALHKFPQGTAFVLLHVYSPPNFLPILGAKIPAGQLREQELIAHKKMNLQRISDNLDQYQLICAQQKVQAEKLVVESDDVAYGLVDVISEHNVSMLVMGAADDKHYTKKAAPFGHDVMQDCRQSATSAQCSVERSSSLSEIWCVSNTWLHKLNLEPHIETTSSDRYSDKEKEDTKERGESDNELQHIPMQLERVRQEAYEEKCRREKAEQELFEALQKVSENLYFGELKQKNEIEVKLATTMEEVDRLARTADELAAKFQEQCEKILVLEKRSAHSDRIIKDLMLQRDKAVREAEAIRVKNGESTAIADRTIPITELSISEIKEATSNFDHSSKVGESVYGSVYKGLLRQTNVAVKKLNPESTESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMLTDEFKATTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEVWTVLEPMLRSASSMLCSLSFKSVSEDFGNVPSYFICPIQQDVMRDPLIAADGFTYEAEAIREWFDSGHYTSPMTNLDLPHPKPPGEQEFCESNVQGKRRMRAKCRITIQLHYIADRPGRYIQDFTANLPKRGQEKMDEEEIHIAVGKNFRKEKANILWAAARFPRATIVLVHVHWPSKWMPFMGGKVLYKFADEKEKEMHRAKETDAMVKMLSQYKNLCGSRKVRAHYLSHDDVLAGVVNLIKKLKIKRIIIGSRSMSKEAMLRKCCQVWVVINGKHINDHLEHTGSIGYGGSAESLASVHELSDDSNGYTTPPSDFADEIMYDDGVIQMDGADELATETETEDEESIETGELNSYEEEGEHSSGETAHRTDEIQSFRSITERAEELMEEIDKLQRKLKELQEEDDRSILSPRQKAAAASLKKEKRLSTGRYPELQLPQHISRFSMSMISKATGNFCSGNLIGEGGYGPVYKGKLGGVAVAIKLLRPHGRQGFPEYKQEVVVLSRMEHPHIVRLMGVCPESCGLVYEHLPNGTLLDTLSNSKSLSWKDRVRILGEQRSALAYLHSCRPHAIIHADLKLTNILLDAANSSRLGDFGTARAVHVKPLQDQADTICRRTNPMGTTGYMDPVFFVTGELTAESDVYAFGVVVLQVLTGLLDLNIADQVREALKMDAVHSVLDASAGSWPEVQAEKLLRLALRCCSLERKRRPAITCDAEWRSLDIMLRMANSPSKSRKWTSISIHAT
Length2253
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.441
Instability index46.67
Isoelectric point6.40
Molecular weight252430.78
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03457
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     479.32|     102|     304|     460|     566|       1
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  461-  564 (163.27/99.05)	EKEHLQIYNELQKANEQIM..E....LERKLMHANSLMEELQTVQGELQRqkDNAVKEAEKMSQINCNNVSCSTGAVA.................................LTEFTY..................TEIK.EATNDFDESKMIGHGGCGSVYK
  850-  912 (37.68/15.02)	.........................................................EGEAIK....DWLQRGHKTSP.................................MTYLSFtyyelipnnalpmatagsPSPY.PGDSP..EPSFSGEKVYVAV..
 1128- 1169 (28.16/ 6.45)	EKAEQELFEALQKVSENLYfgE....LKQK....NEIEVKLATTMEEVDR................................................................................................................
 1180- 1267 (134.97/77.22)	.........KFQEQCEKIL..V....LEKRSAHSDRIIKDLM.....LQR..DKAVREAEAIRVKNGESTAIADRTIP.................................ITELSI..................SEIK.EATSNFDHSSKVGESVYGSVYK
 1566- 1606 (37.80/15.09)	.........................................................EAEAIR....EWFDSGHYTSP.................................MTNLDL..................PHPKpPGEQEFCESNVQG.........
 1883- 1982 (77.44/40.74)	...EIQSFRSITERAEELM..EeidkLQRKL.......KEL...QEEDDR............................silsprqkaaaaslkkekrlstgrypelqlpqhISRFSM..................SMIS.KATGNFCSGNLIGEGGYGPVYK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|    1597.74|     493|     713|     565|    1277|       2
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  565-  849 (458.04/312.86)	.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GFLRHTTVAIKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKGIAHGDLKPDNILLGDNFVGKLGDFGISRPLN...LTNTTITPYHRTNQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCRYDRKERPDLAKEA.WGVLQAMV...NYPDKK.C............KIPSFFICPMTQEIMKDPHIAADGFTY
  873- 1179 (167.85/190.42)	TYYELIPNNALPMATAGspspypgdspepsfsgekvyvavGE..ESSRGTLLWALHKFPQGTaFVLLHVYSPPNFLPILGAKIPAGQLREQELIAHKKMNLQRISDNLDQYQLICAQQKVQAEKLvvESDDVAYGLVDVISEHNVSMLVMGAaddKHYTKKAapfghdVMQDCRQsatsaqcsverssslseIWCVSNtwlHKlNLEPHIETTSSDRY..SDKEKEDTKERGESDNELQHIPMQ...............................LERVRQEAYEEKCRrekaeqelfealqkvsenlyfgelkqkneievklattmeevdrLARTAD.........................................ELAA.........................................................................................................................................................................................................................................................................................................................................................................................................
 1268- 1565 (433.05/294.65)	...............................................................................................................................................................................................................................................................................................................................................................................................kfqeqcekilvlekrsahsdriikdlmlqrdkavreaeairvkngestaiadrtipitelsiseikeatsnfdhsskvgesvygsvykGLLRQTNVAVKKLNPESTESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMLT...DEFKATTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEV.WTVLEPML...RSASSMlCslsfksvsedfgNVPSYFICPIQQDVMRDPLIAADGFTY
 1621- 1927 (183.22/123.42)	HYIADRPGRYIQDFTAN.....lpkrgqekmdeeeihiavGKnfRKEKANILWAAARFPRAT.IVLVHVHWPSKWMPFMGGKVLYKFADEKEKEMHRAKETDAMVKMLSQYKNLCGSRKVRAHYL..SHDDVLAGVVNLIKKLKIKRIIIGS...RSMSKEA......MLRKCCQ.................VWVVIN...GK.HINDHLEHTGSIGYggSAESLASVHELSDDSNGYTTPPSDfadeimyddgviqmdgadelatetetedeesIETGELNSYEEEGE......................................hssgeTAHRTDeiqsfrsiteraeelmeeidklqrklkelqeeddrsilsprQKAA.........................................................................................................................................................................................................................................................................................................................................................................................................
 1983- 2250 (355.59/238.22)	................................................................................................................................................................................................................................................................................................................................................................................................................................aaslkkekrlstgrypelqlpqhisrfsmsmiskatgnfcsgnligeggygpvykGKLGGVAVAIKLLRPHGRQGFPEYKQEVVVLSRMEHPHIVRLMGVCPESCGLVYEHLPNGTLLDTLS...NSKSLSWKDRVRILGEQRSALAYLHSCRPHAIIHADLKLTNILLDAANSSRLGDFGTARAVHvkpLQDQADTICRRTNPM.GTTGYMDPVFFVTGELTAESDVYAFGVVVLQVLTGLLDLNIADQVREALKMDAVHSVLDASAGSWPEVQAEKLLRLALRCCSLERKRRPAITCDAeWRSLDIMLrmaNSPSKS.R............KWTSISI....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.91|      23|     261|      45|      70|       3
---------------------------------------------------------------------------
   45-   70 (33.60/27.72)	RSSLPSSSSS...PLpPLSPQpvVPAGVE
  308-  333 (39.30/20.37)	QQSLPRRSNSishPF.PFSRQ..LENGVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.10|      23|      28|     398|     425|       4
---------------------------------------------------------------------------
  398-  421 (37.59/33.37)	EMFEQWQQVR...NELERsRKEASEGR
  427-  452 (34.51/15.88)	ELFEASKMFRareNSLCK.EKIAVEER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.35|      15|      76|     262|     276|       5
---------------------------------------------------------------------------
  262-  276 (28.18/13.54)	REAS.QFADKGDSPRS
  339-  354 (26.16/12.09)	RPNSvDVAPKGCSPNS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03457 with Med32 domain of Kingdom Viridiplantae
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