<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03456

Description Uncharacterized protein
SequenceMAVASARSSLPSSSSSPLPPLSPQPVVPAGVERMLVRAGGGTRSLREIDEEEDDDDDCGGKTYVSVGKDLKDGKANIQWAARKLQPQQGDVNKLLVLLHVHQPADRIMSGLCKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLSYCRAFPKVQAEKLVIEKNSVANGIVELIDQHHITKLVMGTSSFSVKRQVPKSKVAAIVHQQAKPYCQILYICKEALACTREASQFADKGDSPRSSSGSSLSDKSEFPPRSVSLPSWYSGFLGSPDQQSLPRRSNSISHPFPFSRQLENGVENISPIRPNSVDVAPKGCSPNSSHQSKGSSPTLTDLDTVDGLSVPVSSSSSEEHQHFMVEANMQNEMFEQWQQVRNELERSRKEASEGRQKAEKELFEASKMFRARENSLCKEKIAVEERLTREKVSLEKEHLQIYNELQKANEQIMELERKLMHANSLMEELQTVQGELQRQKDNAVKEAEKMSQINCNNVSCSTGAVALTEFTYTEIKEATNDFDESKMIGHGGCGSVYKGFLRHTTVAIKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKGIAHGDLKPDNILLGDNFVGKLGDFGISRPLNLTNTTITPYHRTNQIKGTLGYMDPGYIASGELTAQKERPDLAKEAWGVLQAMVNYPDKKCKIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKTSPMTYLSFTYYELIPNNALPMATAGSPSPYPGDSPEPSFSGEKVYVAVGEESSRGTLLWALHKFPQGTAFVLLHVYSPPNFLPILGAKIPAGQLREQELIAHKKMNLQRISDNLDQYQLICAQQKVQAEKLVVESDDVAYGLVDVISEHNVSMLVMGAADDKHYTKKAAPFGHDVMQDCRQSATSAQCSVERSSSLSEIWCVSNTWLHKLNLEPHIETTSSDRYSDKEKEDTKERGESDNELQHIPMQLERVRQEAYEEKCRREKAEQELFEALQKVSENLYFGELKQKNEIEVKLATTMEEVDRLARTADELAAKFQEQCEKILVLEKRSAHSDRIIKDLMLQRDKAVREAEAIRVKNGESTAIADRTIPITELSISEIKEATSNFDHSSKVGESVYGSVYKGLLRQTNVAVKKLNPESTESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMLTDEFKATTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEVWTVLEPMLRSASSMLCSLSFKSVSEDFGNVPSYFICPIQQDVMRDPLIAADGFTYEAEAIREWFDSGHYTSPMTNLDLPHPKPPGEQEFCESNVQGKRRMRAKCRITIQLHYIADRPGRYIQDFTANLPKRGQEKMDEEEIHIAVGKNFRKEKANILWAAARFPRATIVLVHVHWPSKWMPFMGGKVLYKFADEKEKEMHRAKETDAMVKMLSQYKNLCGSRKVRAHYLSHDDVLAGVVNLIKKLKIKRIIIGSRSMSKEAMLRKCCQVWVVINGKHINDHLEHTGSIGYGGSAESLASVHELSDDSNGYTTPPSDFADEIMYDDGVIQMDGADELATETETEDEESIETGELNSYEEEGEHSSGETAHRTDEIQSFRSITERAEELMEEIDKLQRKLKELQEEDDRSILSPRQKAAAASLKKEKRLSTGRYPELQLPQHISRFSMSMISKATGNFCSGNLIGEGGYGPVYKGKLGGVAVAIKLLRPHGRQGFPEYKQEVVVLSRMEHPHIVRLMGVCPESCGLVYEHLPNGTLLDTLSNSKSLSWKDRVRILGEQRSALAYLHSCRPHAIIHADLKLTNILLDAANSSRLGDFGTARAVHVKPLQDQADTICRRTNPMGTTGYMDPVFFVTGELTAESDVYAFGVVVLQVLTGLLDLNIADQVREALKMDAVHSVLDASAGSWPEVQAEKLLRLALRCCSLERKRRPAITCDAEWRSLDIMLRMANSPSKSRKWTSISIHAT
Length2149
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.463
Instability index46.55
Isoelectric point6.37
Molecular weight240805.37
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03456
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|    2725.59|     689|     713|     695|    1407|       1
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   10-  234 (58.93/27.15)	.........LP...SSSSSPLPPLSPQPVVpAGvermlvragggtrslreideeedddddcgGKTYVSVGKDlkDGKANIQWAARKLqPQqGDVnklLVLLHVHQPADRI.MSGlCKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLSYCrAFPKVQAEKLVIEKNSVANGIVELIDQHHITKLVMGTS..SFSVKRQVP.KSKVAAIVHQQA.KPYCQI................................LY..ICKEalactREASQFADKGD...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  363-  769 (559.43/394.70)	....................................................................................................................................................................................................................................................................................sprsssgsslsdksefpprsvslpswysgflgspdqqslprrsnsishpfpfsrqlengvenispirpnsvdvapkgcspnsshqskgssptltdldtvdglsvpvssssseehqhfmveanmqnemfEQWQQVRNELERSRKEASEG...RQKAEKEL.FEAskMFRARENsL....CKE.KIAVEERL..TREKVS.LE..KEHLQIYNELQKANEQIMELERKLMHANSLMEELQtvqgeLQRqkDNAV....KEAEKMSQINCN..NVS.CSTGAVA..LTEFTYTEIKEATNDFDESKMIGHGGCGSVYKGFLRHTTVAIKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKGIAHGDLKPDNILLGDNFVGKLGDFGISRP.....LNLTNTTITPYHRTNQIKGTLGYMDPGY......................................IASG.........................................EL.TaqkErPdLAKEAWGVLqamvnypdkkC............KIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKTSPMTYLSFT
  770- 1485 (1195.43/835.44)	YYELIPNNALPMATAGSPSPYPGDSPEPSF.SG.............................EKVYVAVGEE..SSRGTLLWALHKF.PQ.GTA...FVLLHVYSPPNFLPILG.AKIPAGQLREQELIAHKKMNLQRISDNLDQYQLIC.AQQKVQAEKLVVESDDVAYGLVDVISEHNVSMLVMGAADdKHYTKKAAPfGHDVMQDCRQSATSAQCSVerssslSEIWCVSNtwlHKlNLEPHIETTSSDRY..SDKE.....KEDTKERGESD................................................................................................................................NELQHIPMQLERVRQEAYEEKCRREKAEQEL.FEA..LQKVSEN.LYFGELKQ.KNEIEVKLATTMEEVDRLA..RTADELAAKFQEQCEKILVLEKRSAHSDRIIKDLM.....LQR..DKAV....REAEAIRVKNGE..STA.IADRTIP..ITELSISEIKEATSNFDHSSKVGESVYGSVYKGLLRQTNVAVKKLNPESTESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRM.....LTDEFKATTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEV.WtvlE.P.MLRSASSML..........CslsfksvsedfgNVPSYFICPIQQDVMRDPLIAADGFTYEAEAIREWFDSGHYTSPMTNLDLP
 1518- 2122 (911.79/606.98)	YIADRPGRYIQDFTANLP.....KRGQEKM.DE.............................EEIHIAVGKNfrKEKANILWAAARF.PR.AT....IVLVHVHWPSKWMPFMG.GKVLYKFADEKEKEMHRAKETDAMVKMLSQYKNLC.GSRKVRAHYL..SHDDVLAGVVNLIKKLKIKRIIIGSRS...............MS...KEAMLRKC........CQVWVVIN...GK.HINDHLEHTGSIGYggSAES.....LASVHELSDDS................................................................................................................................NGYTTPPSDF..ADEIMYDDGVIQMDGADELaTET..ETEDEES.IETGELNSyEEEGEHSSGETAHRTDEIQsfRSITERAEELMEEIDKL..........QRKLKELQ.....EED..DRSIlsprQKAAAASLKKEKrlSTGrYPELQLPqhISRFSMSMISKATGNFCSGNLIGEGGYGPVYKGKLGGVAVAIKLLRPHGRQGFPEYKQEVVVLSRMEHPHIVRLMGVCPESCGLVYEHLPNGTLLDTLS...NSKSLSWKDRVRILGEQRSALAYLHSCRPHAIIHADLKLTNILLDAANSSRLGDFGTARAvhvkpLQDQ...ADTICRRTNPMGTTGYMDPVFFVTGELTAESDVYAFGVVVLQVLTGLLDLNIADQVREALKMDAVHSVLDASAGSWPEVQAEKLLRLALRCCSLERKRRPAITCDAeW..........................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.28|      20|      23|     241|     262|       2
---------------------------------------------------------------------------
  241-  262 (34.86/22.53)	GSslSDKSEFPPR..SVSLPSWYS
  266-  287 (35.42/17.40)	GS..PDQQSLPRRsnSISHPFPFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.77|      22|      27|     298|     319|       3
---------------------------------------------------------------------------
  298-  319 (41.70/29.98)	SPIRP..NSVD..VAPKGCSPNSSHQ
  324-  349 (28.07/17.26)	SPTLTdlDTVDglSVPVSSSSSEEHQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03456 with Med32 domain of Kingdom Viridiplantae
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