<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03451

Description Uncharacterized protein
SequenceMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVIFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSTVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQQQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGSGMGQQQPQMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length852
PositionUnknown
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.474
Instability index56.29
Isoelectric point8.71
Molecular weight91652.59
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03451
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.06|      19|      19|     724|     742|       1
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  728-  748 (38.06/ 8.84)	MQQMQQQQQQ.QQIQQmqQQQ.Q
  749-  769 (35.00/ 7.50)	MQQMQQQQQQpQQLQQ..QQQpQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.72|      33|      34|     657|     689|       2
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  665-  699 (60.07/15.59)	NQLQQQNQL..HQQHQLQPQNQLQQQHqlQQQLQQQQ
  774-  808 (53.57/13.06)	GMGQQQPQMvgSGMGQQQPQMVGAGMG..QQQPQMVG
  809-  834 (37.08/ 6.64)	AGMGQQ..Y..MQGH....GRTVQQMM..QGKMAPQ.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.56|      21|      24|     238|     258|       3
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  250-  274 (25.46/ 9.21)	NHP.ITKMDTaATSVPV.PtsnG...NPSV
  410-  434 (21.56/ 6.72)	NTP.ITGNSNiAVSSSL.G...GiqsNIGI
  435-  457 (22.54/ 7.35)	SGPpVTQGGS.MGSTQLgQ...G...GINT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.20|      16|     145|     502|     518|       4
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  502-  518 (30.31/13.32)	PIVQHPNaQQQQQQQQQ
  649-  664 (33.90/12.20)	PTQQPPM.QQQQLQQQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     109.63|      27|      88|     378|     404|       5
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  276-  300 (25.29/ 8.39)	.G..P.ML........TRQPN..G..............VVANiktepTTLPP.M
  301-  335 (27.32/ 9.72)	VSA.PaFShvtpvanGVSQGL..S...........TVQSPSP.....SLISQET
  347-  384 (22.43/ 6.50)	PLInP.IQ..........QSIrpGgpanvsilnnlSQHRSVA.....TIISGGM
  385-  405 (34.59/14.51)	PGI.P.MS.......GTGQSI..G...........SQQVVQN.....T......
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.47|      26|      89|     127|     152|       6
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  127-  152 (48.43/34.74)	HEVQKHCILVAASNPYPLPTPVYRPL
  218-  243 (42.04/29.08)	HAKNPHFLVLLSDNFLEARTALSRPL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.10|      14|      64|     536|     555|       7
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  519-  532 (28.60/13.46)	QQQPPPKYVKIWEG
  537-  550 (26.51/19.09)	QRQGQPVFICKLEG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.31|      18|      24|     458|     476|       8
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  458-  476 (28.58/22.16)	NQNMISSLGTTTvSSAPAM
  484-  501 (32.72/20.62)	QQAGVNSLGVTN.SSAMNM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.47|      20|     101|     596|     619|      10
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  596-  619 (25.54/20.17)	LNQHGflgQLQEKKLcAVIQLPSQ
  700-  719 (37.93/16.11)	LQQHM...QLQTQGL.PLQQQQSQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03451 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGN
2) LPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHV
3) PVANGVSQGLSTVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILN
4) QMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGSGMGQQQPQMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
5) SNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLG
6) TNSSAMNMPIVQHPNAQQQQQQQQQQQQPPPKYVKIWEG
377
243
311
748
430
494
416
309
368
852
492
532










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIW
525
530