<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03450

Description Uncharacterized protein
SequenceMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVIFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSTVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQQQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length841
PositionUnknown
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.467
Instability index56.04
Isoelectric point8.71
Molecular weight90554.40
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03450
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     140.67|      19|      19|     724|     742|       1
---------------------------------------------------------------------------
  506-  522 (32.81/ 6.53)	HPNAQQ..QQQQQQ..QQQQP
  657-  675 (33.06/ 6.64)	QQQLQQ..QQNQLQQQNQLHQ
  717-  736 (36.65/ 8.21)	QSQGHP.lQQQQMQQMQQQQQ
  737-  757 (38.14/ 8.85)	QQQIQQmqQQQQMQQMQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     173.82|      23|      24|     765|     787|       2
---------------------------------------------------------------------------
  676-  695 (28.75/ 6.95)	QHQLQPQNQLQQQHQL...QQ..QL
  696-  714 (30.88/ 8.13)	QQQQLQQHMQLQT.Q...GLP..LQ
  767-  791 (42.50/14.58)	QPQMVGTGMGQQQPQMMVGAGmgQQ
  792-  811 (39.94/13.16)	QPQMVGAGMGQ...QYMQGHG..RT
  812-  832 (31.75/ 8.62)	VQQMMQGKMAPQGPGSMPGAG....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     114.13|      24|      24|     455|     478|       3
---------------------------------------------------------------------------
  388-  406 (22.81/ 7.47)	PMS.GTGQSIGSQQVVQNTA.......
  416-  437 (32.29/14.02)	NSNIAVSSSLG..GIQSNIGISG...P
  438-  455 (23.37/ 7.86)	PVTQG..GSMGSTQLGQG.......gI
  456-  482 (35.66/16.35)	NTNQNMISSLGTTTVSSAPAMMPtpgM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.81|      15|      24|     238|     258|       4
---------------------------------------------------------------------------
  238-  252 (29.42/11.85)	ALSRPLP...GNLVTNHP
  260-  277 (22.40/ 7.01)	ATSVPVPtsnGNPSVNGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.96|      18|      24|     301|     318|       5
---------------------------------------------------------------------------
  301-  318 (30.57/18.29)	VSAPAFSHV...TP.......VANGVSQ
  323-  343 (23.76/12.40)	VQSPSPSLIsqeTN.......LANDSVQ
  349-  372 (20.63/ 9.70)	IN.PIQQSI...RPggpanvsILNNLSQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03450 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGN
2) LPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHV
3) PVANGVSQGLSTVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILN
4) QMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
5) SNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLG
6) TNSSAMNMPIVQHPNAQQQQQQQQQQQQPPPKYVKIWEG
377
243
311
748
430
494
416
309
368
841
492
532










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIW
525
530