<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03435

Description Uncharacterized protein
SequenceMAPPSMDYWLGFFRGAGDSIFDAIDAAIALLLHPEGAASVPSLCSSDRAEVITDDDGAVPRRDDDPVAAETERIKAILLNDQEKVTEIGKAVSSYRKHNSKQIRHLVRLLIEGWKRIVDEWMSSRDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSIRLSEENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPVAQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDKPASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGRPRNNSNFNNNRNWSR
Length378
PositionUnknown
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-1.057
Instability index58.34
Isoelectric point6.74
Molecular weight42421.41
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03435
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.53|      49|     145|       1|      68|       1
---------------------------------------------------------------------------
    1-   68 (68.81/72.68)	MAPPSMDywlgffRGAgdsIFDAIDAAIALLLHPEGAASVPSLcssdraevitDDDGAVP..................RRDDDPVA
  148-  214 (78.73/42.51)	LSSPSMD......EGA...LFATPSTSIRLSEENQGSKFFDGM..........DDDGNTRsnggrdngrlytrnqepaRRPLPPVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.78|      17|      17|     254|     270|       2
---------------------------------------------------------------------------
  250-  266 (30.01/13.73)	AMLARPSNPESGPGRPQ
  267-  283 (29.77/13.57)	PRTKQHQDASPAQGRSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.06|      26|     126|     215|     240|       3
---------------------------------------------------------------------------
  215-  240 (48.56/24.53)	QQYDPDQSWKQEQSAMR.QSRPQELSN
  343-  369 (45.50/22.56)	QMVDPQNLPKQANRNWQpNGRPRNNSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      26.91|       9|      15|     297|     307|       4
---------------------------------------------------------------------------
  297-  307 (10.91/14.04)	NSvrAKLELAK
  315-  323 (16.00/10.74)	NS..AKLEVTK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03435 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSIRLSEENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPVAQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDKPASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGRPRNNSNFNNNRNWSR
125
378










Molecular Recognition Features






MoRF SequenceStartStop




NANANA