<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03432

Description Uncharacterized protein
SequenceMAAPSAAAAWVDWAAEYTKAAQAESRPPAEWAARVASVVAAAGDAPWSPGLAEMLARALLYGGGGAAWKYAEAALAAGLASPALLLAILSTRVIPHRFTRPTAYRLYLELLRRHGFNFAFQMKAANFKKIMQLIDDNLGLSKIFGFSTCEPGLVDAALDDEGLLELIPDKKAHWPTRSNDVSAFDGTFSEQRIDKIDKLQKMNNVITIELIGHLLHDKVITHILSLARENIKFHPIVTSNPLSSPNGRCLGASYSAQWIPIDMYLEDCLDGSIAATNSIEILSGLIKALQAVNRATWHDAFLALWIASLRLVQREREPIEGPVPHLDTRVCMLLSITTLAIVDIIEESDSEMNSNWKEKRTSDDLRKELMLSLQTLGDYESLLVPPPCIISVANQAASKAAMFVSGTNISSGYMENVNDRTTNYSGNMWHLIVESCISRNLLETSVYYWPGYINGHVNSITHALPSQLAAWSSFMKRAPLTQSLVNVLVATPAPSLAEVQKLYEVAVDGSDEDKVSAATILCGATLLRGWNFQEHTVRLVVKLLSSSDPIDFSGGESQLVKHGRMLNVIVTGISPVDYVPIFSFHGLIPELAAALMAICEVFGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVVSIRSSAKNRNTQKQLPVTSNPSSEHHIFMDSFPKLKLWYRQHQACLASTLSGFAHGAPVHKNVDSLLNLMFRKANKESTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLVTGGSTLGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALESLAASCPWPSMPIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVFQLLRSCFTATLGMSSTTSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLLMLSVKDIAETTVSRHRSDKVRKTKYVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLFQEMLPSWFLSVQDLGRGGAASGGTVYKLGGHALAYLAVYAGMFAWGIDPTPVSRRRERVMWSHFEFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCWAHEVDLRVLRRLSAGLRQWKEDELAVALLRRAGPEAMAAAAELIIGGDW
Length1253
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.141
Instability index41.04
Isoelectric point6.82
Molecular weight136276.40
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03432
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.46|      63|      72|     761|     830|       1
---------------------------------------------------------------------------
  761-  799 (43.50/28.52)	..............................SISNSS..................G...PGVDD...SHLWPQlPAWEiLEAVPFVVDAALTAC
  802-  871 (90.14/67.56)	GRLFPReLATGLKDLTDfLPASLATIVSyfSAEVTR..................GvwkPAFMN...GTDWPS.PAAN.LSMVEEHIKKIVAAT
  872-  930 (43.82/18.01)	GVDVPR.LVTGGSTLGT.LPLPLAAFVS........ltitykldkaserflnlaG...PALESlaaSCPWPS.....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.76|      38|     433|     544|     582|       2
---------------------------------------------------------------------------
  544-  582 (64.39/41.89)	LSSSDPIDFSGGESQLVKHGrMLNVIVTGISPVD....YVPIF
  979- 1020 (66.38/38.91)	MSSTTSVCSCGGIASLLGHG.FGSHCSGGLSPVApgilYLRIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.85|      30|      72|     613|     646|       4
---------------------------------------------------------------------------
  613-  646 (48.21/39.00)	PRTGEEISAHTVFSNAFIlLLRLWKFNHPPleyC
  688-  717 (59.64/35.17)	PVTSNPSSEHHIFMDSFP.KLKLWYRQHQA...C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     284.08|      91|     734|     365|     465|       5
---------------------------------------------------------------------------
  365-  465 (145.50/123.64)	LRKELM....LSLQTLGDYESllVPPPCIISVANQA....ASKAAMFVSGTNISSgymenVNDRTTNYsgnMW.HL.IVESCISRNL.LETSVYYWPGYINGHVNSITHALP
 1101- 1202 (138.58/92.70)	LFQEMLpswfLSVQDLGRGGA..ASGGTVYKLGGHAlaylAVYAGMFAWGIDPTP.....VSRRRERV...MWsHFeFLASALDGKIsLGCDLSLWRAYVSGFLGLVVECTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.94|      13|      15|      28|      42|       6
---------------------------------------------------------------------------
   28-   42 (17.12/13.96)	PaeWAARVASVVAAA
   46-   58 (22.82/12.16)	P..WSPGLAEMLARA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03432 with Med33 domain of Kingdom Viridiplantae
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