<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03431

Description Uncharacterized protein
SequenceMAAPSAAAAWVDWAAEYTKAAQAESRPPAEWAARVASVVAAAGDAPWSPGLAEMLARALLYGGGGAAWKYAEAALAAGLASPALLLAILSTRVIPHRFTRPTAYRLYLELLRRHGFNFAFQMKAANFKKIMQLIDDNLGLSKIFGFSTCEPGLVDAALDDEGLLELIPDKKAHWPTRSNDVSAFDGTFSEQRIDKIDKLQKMNNVITIELIGHLLHDKVITHILSLARENMQSQWAAFTNRLQLLITKSSTLQTSTVALEAFQQLNLDVCNIFRENKHWLRRKFHPIVTSNPLSSPNGRCLGASYSAQWIPIDMYLEDCLDGSIAATNSIEILSGLIKALQAVNRATWHDAFLALWIASLRLVQREREPIEGPVPHLDTRVCMLLSITTLAIVDIIEESDSEMNSNWKEKRTSDDLRKELMLSLQTLGDYESLLVPPPCIISVANQAASKAAMFVSGTNISSGYMENVNDRTTNYSGNMWHLIVESCISRNLLETSVYYWPGYINGHVNSITHALPSQLAAWSSFMKRAPLTQSLVNVLVATPAPSLAEVQKLYEVAVDGSDEDKVSAATILCGATLLRGWNFQEHTVRLVVKLLSSSDPIDFSGGESQLVKHGRMLNVIVTGISPVDYVPIFSFHGLIPELAAALMAICEVFGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVVSIRSSAKNRNTQKQLPVTSNPSSEHHIFMDSFPKLKLWYRQHQACLASTLSGFAHGAPVHKNVDSLLNLMFRKANKESTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLVTGGSTLGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALESLAASCPWPSMPIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVFQLLRSCFTATLGMSSTTSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLLMLSVKDIAETTVSRHRSDKVRKTKYVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLFQEMLPSWFLSVQDLGRGGAASGGTVYKLGGHALAYLAVYAGMFAWGIDPTPVSRRRERVMWSHFEFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCWAHEVDLRVLRRLSAGLRQWKEDELAVALLRRAGPEAMAAAAELIIGGDW
Length1304
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.121
Instability index41.72
Isoelectric point7.21
Molecular weight142296.23
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03431
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.46|      63|      72|     812|     881|       1
---------------------------------------------------------------------------
  812-  850 (43.50/27.87)	..............................SISNSS..................G...PGVDD...SHLWPQlPAWEiLEAVPFVVDAALTAC
  853-  922 (90.14/65.87)	GRLFPReLATGLKDLTDfLPASLATIVSyfSAEVTR..................GvwkPAFMN...GTDWPS.PAAN.LSMVEEHIKKIVAAT
  923-  981 (43.82/17.63)	GVDVPR.LVTGGSTLGT.LPLPLAAFVS........ltitykldkaserflnlaG...PALESlaaSCPWPS.....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.76|      38|     433|     595|     633|       3
---------------------------------------------------------------------------
  595-  633 (64.39/46.23)	LSSSDPIDFSGGESQLVKHGrMLNVIVTGISPVD....YVPIF
 1030- 1071 (66.38/42.94)	MSSTTSVCSCGGIASLLGHG.FGSHCSGGLSPVApgilYLRIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.99|      54|     487|     146|     203|       6
---------------------------------------------------------------------------
  146-  203 (81.62/66.44)	FSTCEPGLVDAALD.DEGLLELIPdkKAHWPTR.SNDVSAfDGTFSEQRIdKIDKLQKMN
  635-  690 (87.37/55.08)	FHGLIPELAAALMAiCEVFGSLSP..SVSWSPRtGEEISA.HTVFSNAFI.LLLRLWKFN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.31|      50|     236|     221|     323|       7
---------------------------------------------------------------------------
  221-  272 (77.56/73.05)	THILSLARENMQSQWAAFTNRLQLLITKS....STLQTSTVALEAFqqLNLDVCNI
  458-  511 (85.75/13.15)	TNISSGYMENVNDRTTNYSGNMWHLIVEScisrNLLETSVYYWPGY..INGHVNSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.56|      19|    1110|      47|      83|       9
---------------------------------------------------------------------------
   64-   83 (29.66/34.23)	GGAAWKYAEAALAAgLASPA
 1175- 1193 (34.90/ 7.69)	GGTVYKLGGHALAY.LAVYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.53|      12|     450|     282|     294|      10
---------------------------------------------------------------------------
  282-  294 (20.10/17.08)	RKFHPiVTSNPLS
  735-  746 (23.43/14.51)	QKQLP.VTSNPSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.33|      14|      15|       2|      15|      11
---------------------------------------------------------------------------
    2-   15 (25.78/11.90)	AAPSAAAAWVDWAA
   20-   33 (25.55/11.73)	AAQAESRPPAEWAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03431 with Med33 domain of Kingdom Viridiplantae
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