Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MPEFPSPSSPAGGGRRRTLNNADNKPDLHGTMNDPYYYDCRILVDATPEKSSRKKSTFVRHFSCTSSHALVKIAAAIVDPRAVVLHGREPHGEQGGGGATGERGHSRSRAERTGHHHRPLLLRFKPAASRRPLPPPTEQLLRWNPNLLYLISQIEGELQNVSWFQFLPVEPDPSTASERSSKAEQKDALNNIVLSAHLHLQSEGFLSTWTNSFVGPWDPSQGEHNPVVSNGLWVAPGNLEEVAAALCQALRNSLERRAQPTIEFVFAATEEAIFVHVIISARYVRNLCSDDIEKVLTHSPRSVGEGLPVIVAPSGMLGRLVGCCPSDLVRQVYSSKLSAATLPGFTQPTMCQLRGQSYYVEVALGFPAATTDKVPESENNQIKKELDSAKDPQLSADEHQKLESADSVPVLERTFIYPPEAVMVPMVHQAFVRFSSKRMCSQACVGNSSWEGWPFWNFSPSSYFRNSSCLGSSRGLGVNSNFLRLRRQKNSNYNSMASSISSVSSTSNGSEHAVAAEGGDLSADADSMACHQSDLPSNIAGSKMVSKRPRSEIPEVSSRAGKESVDNNQGVNGQGRCSWGWDEEGVAMDINLLISEFGDFSDFFQEEELDFGEPPGTAESHSLVIPGPDCGDATFTDSPSTAMDIPEQRFSPVGLSSLEVFNHQTVAPIHDVVSKVQEPQKDIASPTSSQSVVLSSGRSSHLTRAEALLTYAPEYAAIEISTGETPTSLFTNPYQPRSIKPGSSSFNSRVYSYDAAQSSQMESGEDKPEKSVRLASGNLSRDIGSSNLYTVVQVGKKESDKGLKNTDIQSGKEEASRPISGETSLDSSVVSQRKSDSMFNAGYFLLSMKTALATEMECIKFQAAMCRIRHTLLSLSSKASSELKSALSSLVHTDVSNKLDLVPKYDIKRKENIPARLSIDVDHEVYDRSLENVGVWKPVGTPKGPTHLESFSAKTYTGTSQGLPVKRQPIVDLLSAMALIVQQSTSFVDIALDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGILGTCHSKDCAGVDLVDPLSAEVSDSSVISLLQSDIKAALKTAFANMDGPLLVTDWCRGRSNAAEYASMGDAYSFQHPTGDIRESSSSISIGGDSMSPPQSSHVISNDRGTSELEHHRGYHRVRPTVAVLPLPSLLVGYQDDWLKTSANCLSLWEKAPLEPYASPKPVTYYALCPDIEMLTSAATDFFLQLGTIYEVCKLGTHSPQNSGGQMELSPGKYLSSGLVLTECPDQVKIGNGHSSSISSTSEYLQALSRNWTVKSFVTSLTRVIKDIKLNSSILANQKESTSGPCTVIYVVCPFPEPSAVLETLVECSVALGSVMLSPERERKSFLYSQVAKALNCNASVDESSASNVVMLSGFSIPKLVLQIVTVETLLRLHKPNNELAVLKDMAFTVYNKARRIPKAISTSDMFQSPAYMGRSQSTMMHATSPGPTLWKECLVPRMSGSTLSRETEFDASMRSSVTWDNSWPGRAGGFMDPNKIPDVCVQDDRKYAFEPLFILAEPGSVDYSSGMESSKSGVDASGSGIYSSISGGGSDSGASASALLEGSDNDNAASLHCCYGWTEDWRWLVCIWTDSKGELLDSLIFPFGGISSRQDTKVLQSLFIQILQHGCQIMSSAPESSNTRPRDVIITRIGGFLELEIQEWQKAIYSFGGNEVKKWPVQLRRSIPEGIPSNSNGPALQQQDMGLMQDRNMPSSPSPLYSPHAKSSFMKGALGQSGNKKQILVEQAGMDSSKGSLHLVRSISLVAISQDHSLHLTCQADLLTRPTPGEGNQTSSGPSSYLEGFTPVKSIGSMSASYLLVPSPSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTAIPLAMGYVVSKAVPPVRKDSARLANEDRPSVLSVSIIDHYGGSIAAVQEKMSRGSGKQTRNFTQEAAGRDHETEMHNVLEAVAAELHSLSWMTVSPVYLERRSALPSHCDMVLRLRRLLHYADRHLSQSTEKGDVA |
Length | 2002 |
Position | Kinase |
Organism | Oryza glumipatula |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.318 |
Instability index | 57.26 |
Isoelectric point | 5.92 |
Molecular weight | 217343.08 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP03421 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 58.65| 18| 37| 639| 657| 1 --------------------------------------------------------------------------- 639- 657 (28.23/19.42) PSTAMDIPEQRFSPVgLSS 679- 696 (30.42/15.94) PQKDIASPTSSQSVV.LSS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 161.41| 40| 57| 987| 1027| 2 --------------------------------------------------------------------------- 987- 1027 (69.89/41.33) FVDiALDMDDGDGSFFWLSLDEQK...RRGF.SCD.PSMVHAGCGG 1042- 1086 (54.27/27.43) LVD.PLSAEVSDSSVISLLQSDIKaalKTAFaNMDgPLLVTDWCRG 1488- 1513 (37.25/16.25) ............SSVTWDNSWPGR...AGGF..MD.PNKIPDVC.. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 73.58| 20| 508| 942| 961| 3 --------------------------------------------------------------------------- 942- 961 (37.53/22.98) PKGPTHLESFSAKTYTGTSQ 1430- 1449 (36.05/21.74) PKAISTSDMFQSPAYMGRSQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 153.04| 49| 508| 710| 789| 4 --------------------------------------------------------------------------- 735- 788 (69.73/92.63) QPRSIkPGSSsfnSRVYSyDAAQSSQMES..GEDKPEKSVRLASGNLSRDIGSSNL 1718- 1768 (83.31/36.56) QDRNM.PSSP...SPLYS.PHAKSSFMKGalGQSGNKKQILVEQAGMDSSKGSLHL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 113.15| 36| 611| 589| 627| 5 --------------------------------------------------------------------------- 589- 627 (57.42/47.87) DINLLISEFGDFsdFFQ....EEELDFG..EPPGTAESHSLViPG 1203- 1244 (55.73/35.15) DIEMLTSAATDF..FLQlgtiYEVCKLGthSPQNSGGQMELS.PG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 74.62| 24| 59| 1769| 1797| 6 --------------------------------------------------------------------------- 1769- 1797 (33.84/42.22) VRSISLVAISqDHSLHL.TCqadlLTRPTP 1830- 1854 (40.78/30.53) VPSPSMRYLS.PATLQLpTC....LTSESP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 310.06| 97| 1551| 8| 114| 7 --------------------------------------------------------------------------- 8- 114 (150.37/148.34) SSPAGGG.....RRRTL...NNADNKPDLHGTMNdpYYYDCRILVDATPEKSSRKKSTFVRHFSCTSSHALVKIAAAIVdprAVVLHgrepHGEQGGGGATgERGHSRSR...AERTG 1556- 1663 (159.69/121.54) SSISGGGsdsgaSASALlegSDNDNAASLHCCYG..WTEDWRWLVCIWTDSKGELLDSLIFPFGGISSRQDTKVLQSLF...IQILQ....HGCQIMSSAP.ESSNTRPRdviITRIG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 185.13| 60| 1551| 365| 424| 8 --------------------------------------------------------------------------- 365- 424 (102.26/82.36) GFPAATTDKVPESENNQIKKELDSAKDPQLSADEHQKLE..SAD.......SV.PV.LERTFIYPPEAVMV 1908- 1978 (82.87/64.88) GSIAAVQEKMSRGSGKQTRNFTQEAAGRDHETEMHNVLEavAAElhslswmTVsPVyLERRSALPSHCDMV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 105.90| 35| 59| 1315| 1354| 12 --------------------------------------------------------------------------- 1315- 1354 (52.71/40.39) SGPCTVIyVVCPFPEPSAVLETL.VECSVALGsvmlSPERE 1376- 1411 (53.19/27.90) SSASNVV.MLSGFSIPKLVLQIVtVETLLRLH....KPNNE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 81.86| 22| 22| 431| 452| 19 --------------------------------------------------------------------------- 431- 452 (43.32/24.23) FVRFS.SKRMCSQACVGNSSWEG 455- 477 (38.54/20.70) FWNFSpSSYFRNSSCLGSSRGLG --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) LLLRF 2) YYYDCRILV | 120 36 | 124 44 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab