<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03417

Description Uncharacterized protein
SequenceMAVCRNVSFQRRLATLQPQNHIRWKKKKSPVPSSNQTRNPISKTLLDVASASADADAIAAAAPRATAPTPAKMDAKVDEMSKAYQELVAAAQAILEARRQPGGENTAAMDAAREAFEQRRKLFAVACDDADALVQSAGQSIVSDPGRFVDVATTPYEDSVRSPTRSSASSSSSSGFGALPDEVLRHILLRLPSTAAAARTSLISRRWRNLWSTLLPKLRFPGVTDLARVGAALRLRVAPVRLLRIESSDRAPDKIVAVLHLAAPLLEGKLCFDVITPAAAAAGAAGTGGAIQIPCFEKATEITIRLRGRLGIQLPPSGVFAKLTALSLSHCRFDDQGQRDLGDAVSSEGCPSLRELRIRDADVVSNLAIRSESLRLVQLSRLEGIRQLTISAPVLTELDLYACLLWRTQFAHISAPALETLHWVDFFSSSSVRFDEMPNVHRLSAYGMVYGRRNTPDSLQLLQHFTEARDVHLSLVYPSIMDMSCELLVQAVKKLPAVEILSLRLLTIGHTFGLCVYHLLKMSTGIRELKLKLEDHIADGEVPCSSGCVCYEPQAWKKNNISLNFLQKVEINNLSGAERQIYCQTTVEMDDARAQDDYSNEKVSRKLLSFSTPGICMEIYLHRNGTRFEDRLDCGRVIAVFIATDGSPPVFCLLLSFSTMLTHQSTNML
Length669
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.057
Instability index53.69
Isoelectric point8.70
Molecular weight73345.50
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03417
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.39|      14|      20|     387|     406|       1
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  387-  406 (20.18/24.32)	QLT.ISAPVLTELDlyacllW
  409-  423 (23.21/12.01)	QFAhISAPALETLH......W
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.78|      69|     102|      31|      99|       4
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   31-   99 (109.53/57.92)	VPSSNQTRNPISKTLLDVASASADADAIAAAAPRATAPTPAKMDAKVDEMSKA....YQELVAAAQAILEARR
  134-  206 (105.26/55.40)	VQSAGQSIVSDPGRFVDVATTPYEDSVRSPTRSSASSSSSSGFGALPDEVLRHillrLPSTAAAARTSLISRR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.33|      20|      23|     276|     298|       5
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  271-  294 (23.13/26.25)	CFDViTPAAAAAGaaGTGGaIQIP
  295-  315 (32.20/21.97)	CFEKaTEITIRLR..GRLG.IQLP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.02|      12|      18|     339|     354|       8
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  339-  354 (13.50/22.20)	RDlGDAVS.....SEgcpSLR
  359-  375 (16.52/ 7.55)	RD.ADVVSnlairSE...SLR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.88|      20|      23|     218|     239|       9
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  218-  239 (26.22/28.81)	LRFPGvTDLA..RVGAALRLrVAP
  243-  264 (28.65/19.43)	LRIES.SDRApdKIVAVLHL.AAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03417 with Med32 domain of Kingdom Viridiplantae
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