<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03409

Description Uncharacterized protein
SequenceMVIAGEVDWREEIFQKIKSFKDAYLSEVLEYNQIVHVPKLTEEQLRSLPVENAEKLRRIRHVKKIIAIMLDLLNTQKSNVHKGMQNIFPIFQQYMGQLRLSISKSKARNTVAKIGCQSQNCSENSHIVNLGSNTAPFTCDARQQKQQEQVISAKTSRMEQAIMTRTPTPQQESHGCHLLGVPSSCFSPKALQPSSTNTLEECFTLSPVTQTVQPIQVASPHVTSPSAYGKSSVPKPRVARVVSHSASIKSRLASSPSRPEGVHAASPNSTSVESTLPIPIAKPGTVRAASPCTPVKSTSQSQLRKPAVTEVDSCRASMTSKLKSPVGKPETAGAASPCASVKSTVSLDVDSVTEFLQHGVVAPTVANGGSSNQAIHTLVSAAPPKAAHQADDQVQNGAEEMDAKKPFSRLIETLLSSSPEALRHSSNSMRLAIWEADQIPAPSPLPYRPRNGKMKRDFDHVTSRPISSPLRSMDESCMTYECVAFEDESSGEYNAKRQKTQVNANDAMVDEIKTINNKLVDTVINIADENGTDEIIYQNGGGMLIKLSYNSMSLSPSLKSLFGASEMTIVMPVKLLVSADYPKSSPILVDSDDEQRRLSDISYAIAVAFGRAVDELPKPRSIEAMAMAWDGCVRRAVTEVAHRHGGGTFSSRHNQWRAG
Length659
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.390
Instability index58.50
Isoelectric point8.83
Molecular weight71721.63
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03409
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     190.11|      22|      22|     262|     283|       1
---------------------------------------------------------------------------
  215-  236 (33.23/15.77)	IQVASPHVTSPSAYGKSSVPKP
  238-  259 (30.11/13.62)	VARVVSHSASIKSRLASSPSRP
  262-  283 (36.97/18.36)	VHAASPNSTSVESTLPIPIAKP
  286-  306 (35.45/17.31)	VRAASP.CTPVKSTSQSQLRKP
  308-  329 (32.70/15.41)	VTEVDSCRASMTSKLKSPVGKP
  332-  349 (21.64/ 7.76)	AGAASP.CASVKSTVSLDV...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.88|      23|      23|     423|     445|       2
---------------------------------------------------------------------------
  423-  445 (41.44/22.46)	RHSSNSMRLAIWEADQIPAPSPL
  448-  470 (41.44/22.46)	RPRNGKMKRDFDHVTSRPISSPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.37|      17|     195|     369|     393|       3
---------------------------------------------------------------------------
  369-  386 (23.91/26.43)	GSSNQAIHTLVSAApPKA
  405-  421 (28.46/ 9.41)	KPFSRLIETLLSSS.PEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.99|      19|      23|     109|     128|       5
---------------------------------------------------------------------------
  109-  128 (29.03/25.91)	NTvAKIGCQSQNCSENSHIV
  133-  151 (32.96/24.00)	NT.APFTCDARQQKQQEQVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.80|      22|      24|     167|     188|       6
---------------------------------------------------------------------------
  167-  188 (42.04/29.08)	PTPQQESHGCHLLGVPSSCFSP
  193-  214 (37.76/25.31)	PSSTNTLEECFTLSPVTQTVQP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03409 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HGVVAPTVANGGSSNQAIHTLVSAAPPKAAHQADDQVQNGAEEMDA
2) KPGTVRAASPCTPVKSTSQSQLRKPAVTEVDSCRASMTSKLKSPVGKPETAGAASPCAS
3) PAPSPLPYRPRNGKMKRDFDHVTSRPISSPL
4) QPIQVASPHVTSPSAYGKSSVPKPRVARVVSHSASIKSRLASSPSRPEGVHAASPNSTSVESTLPIPI
358
282
440
213
403
340
470
280










Molecular Recognition Features






MoRF SequenceStartStop




NANANA