<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03403

Description Uncharacterized protein
SequenceMDAAALGAAAGAPNPAAPVGGDQQPRTERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDAIARANPNASPKWQDVLGQFSMVSMELFNIVEDIKKVSKVFVVYPRNVNAENAAILPVMLSSKLLPEMEAEEATKRDNLLSGITNLTVSGQIEKLKTRIDMIGSACETAEKVIAESRKNYGLGARQGANLGPTLDKAQAANMQEQEGLLRAADCVYRETKGRCVYPKNTSTFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGSMQSQSLLPQMQGLNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQQQFNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
Length519
PositionHead
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.650
Instability index50.68
Isoelectric point9.47
Molecular weight56407.93
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03403
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     235.37|      40|      40|     284|     323|       1
---------------------------------------------------------------------------
  249-  284 (49.14/12.73)	SGGQLLGRPA..PSPGAT.GT.................PN....F..ENVSTPPMPYA...NSPR
  285-  324 (69.54/20.86)	SGTNMMNTPS..PQQHLT.AQ.................QHRQKLM..QTSQQQQLHTQ...QQLR
  325-  364 (42.68/10.15)	PSAAGMLAQSaiPQLQDL.QG.................QSQQKL...QVPGQQQMQYN...QAL.
  395-  452 (38.86/ 8.63)	SHISQFTGAA..NSAMFTaAQassnsqmmanipgsmqsQSLLPQM..QGLNQYSLTGG...HPQR
  453-  495 (35.15/ 7.15)	S........H..PSQMLT.DQ...........mfgmggANSTSMMgmQQQQQQQFNMQanaQNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.69|      44|     118|      65|     109|       2
---------------------------------------------------------------------------
   65-  109 (72.84/45.82)	ARANPNASPKWqDVLGQFSMVSME.LFNIVEDIKKVSKVFVVYPRN
  186-  230 (71.85/41.01)	ARQGANLGPTL.DKAQAANMQEQEgLLRAADCVYRETKGRCVYPKN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03403 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGSMQSQSLLPQMQGLNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQQQFNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
233
519










Molecular Recognition Features






MoRF SequenceStartStop




NANANA