<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03402

Description Uncharacterized protein
SequenceMAAPPTPTPSPSPSLDYWRGFFSGARASIFDAIDAAIRTEAELLELLRALQQLEFTVDAIRVTEIGTAVKPLRKHGSKQIRQLVRSLIDGWKAVVNDWVNNGGAIVDHTPQSMDGSCLEQEEGGLPSPPMDEAAFFATPCTSIQLSEFFDEMDDDGNIRTNGEESAQQHYPANQEPAKKQLPMGQRYDPEQNWKLDQSAMRQSQPYEPSNWQKKQQSVTGARQRPSAAAHGPWTPQKMHLEPKFSEMRPKQQQDTSVAQRRPKPTMADQLSSQVDQNSVQVNAKLEATKRMLQEGYQEFNNANNSSGRSARPAEAKEPKPTTQLQAKEQLQQQLAESARHPSLIPINSSIRVVRISEPWPVTHVQDGVT
Length369
PositionUnknown
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.821
Instability index62.30
Isoelectric point5.89
Molecular weight41168.47
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03402
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.19|      31|     118|      11|      42|       1
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   11-   42 (52.82/38.63)	PSPSLDYwRGFFSGARASI.....FDAI..DAAIRTEAE
  126-  163 (51.37/31.50)	PSPPMDE.AAFFATPCTSIqlsefFDEMddDGNIRTNGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.62|      33|      36|     194|     228|       2
---------------------------------------------------------------------------
  168-  192 (31.93/ 9.97)	..........QHY.P..ANQEpAKKQ...LPMGQRYDPEQN
  194-  228 (53.95/25.86)	KLDQSAmrQSQPYEP..SNWQ.KKQQ...SVTGARQRPSAA
  230-  267 (51.74/20.28)	HGPWTP..QKMHLEPkfSEMR.PKQQqdtSVAQRRPKPTMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.68|      17|      38|     309|     325|       3
---------------------------------------------------------------------------
  309-  325 (30.02/14.93)	SARPAEAKEPKPTTQLQ
  349-  365 (31.66/16.08)	SIRVVRISEPWPVTHVQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03402 with Med26 domain of Kingdom Viridiplantae
Unable to open file!