<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03393

Description Uncharacterized protein
SequenceMQLRLHIPPSVDLFPFPQTARAHQVRSATLLNPRSEQAHRTTPVAGDGSGASAMDGAHGQRQPMSPAISASAVLPQQRQMQLHHHHHHPARSAIADLFTLYLGMNSKQRIEDPTRETSNKLQKRVTAMNRDLPPRDEQFISDFEQLHMQFPDQEQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNVVSSVEVPMGQGVSVTTGGPATSSSSAIAVPNAPSFHPSNPTSPLSAMNTIGSPTQSGIDQPIGANVSPIKGAEFSSPGQLGLTARGDQSRRGAEISYLHHLSCRIILAGLESDLKPATHAVIFQHMVNWLVNWDQRPHGVDQADALQLQTLRLERPLHEWMHLCLDVIWILVNEDKCRVPFYELVRSNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALCTTPSPDWWRRVLLVAPCYRQHPQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTSLDERAMGMFWVLSFTMAQPACEAVMNWFTSVGVADLIQGPNLQPNERMTMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQNVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKVKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITMKTRGIAEVEHIIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPTYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHQIQDLLSKAITNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERPELQQRIKAFCTSRSPEHWLKNQPPKRVELQKALGNHLSGKERYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAVYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLASSNSSICPPPEYFANLLFGLVNNVIPPLSCKSKSNPSDAAGSTARTTYNKPHTSSAGGISNSDGQRAFYQNQDPGSYTQLVLETAAIEILSLCVPASQIVSSLVQIIAHVQAMLIQSNSGHGMSGGLGQNSGVPTSSGGGVEPVGANRPNTTASGINASNFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPHEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPPVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVMEILRPDVQHLLSHLKTDPNSSVYAATHPKLLPPHSCTADYGRQYYIEVGFVNAEGSWLYTIIGSTQADLIKHNKGERAVTQLLKDVDPLQTAVVLTLRRQRPRRELSPDYTCTRNSILEAWRARRLAADVSDGLTPSRLRLASAFPLLAASINPRAAPEPLQIKTRVSSSGSVHPSREIQIASQIRDQRVMGRQPCCEKVGLKKGPWTADEDQKLVTFLLSNGHCCWRLVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEEEEKLVIDLHEQLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLKKMGLDPVTHRPVMSLAQPDPLKQQQQQQEPSVSGGTGADDKEEEEETPTSAQPQGVACAASSASAVSSSCSSSASASAATPGADVDWPGLFEVDAILDIDWAGLLSACGDDGGCSAIGVDMLFDQCSDVGFDQDVWM
Length2082
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.148
Instability index48.51
Isoelectric point6.91
Molecular weight232299.99
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03393
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.16|      41|     349|     418|     486|       1
---------------------------------------------------------------------------
  442-  486 (63.26/77.50)	FLSQSYPSIAG.ESvaNLRYSPITyPSVLGEPlHGEDLANSIP....KGG
  792-  837 (66.91/26.16)	FLGQNVPSIAMvET..YVRLLLIT.PHSLFRP.HFTTLTQRSPsilsKSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.09|      15|      15|    1264|    1278|       2
---------------------------------------------------------------------------
 1264- 1278 (28.13/15.28)	FAQYLASSNSSICPP
 1282- 1296 (26.97/14.36)	FANLLFGLVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.21|      17|      19|     488|     506|       3
---------------------------------------------------------------------------
  488-  506 (31.40/22.92)	DWERalRCLRHALCTTPSP
  507-  523 (36.81/21.04)	DWWR..RVLLVAPCYRQHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.45|      13|      18|    1852|    1865|       4
---------------------------------------------------------------------------
 1852- 1865 (23.44/18.23)	KLVTfLLSNGHCC...W
 1870- 1885 (22.00/11.20)	KLAG.LLRCGKSCrlrW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.19|      16|      19|    1764|    1779|       5
---------------------------------------------------------------------------
 1764- 1779 (25.98/14.69)	LAADVSDGLTPSRLRL
 1786- 1801 (27.21/15.79)	LAASINPRAAPEPLQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.13|      14|      18|       6|      23|       6
---------------------------------------------------------------------------
    9-   23 (21.89/19.92)	PSVDLFPfPQTARAH
   26-   39 (24.25/ 7.15)	RSATLLN.PRSEQAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.81|      24|     349|    1302|    1347|       7
---------------------------------------------------------------------------
   40-   66 (41.65/13.52)	RTT...PVAGDGSGASAMDgahGQR...QPMSP
 1314- 1343 (36.16/31.89)	RTTynkPHTSSAGGISNSD...GQRafyQNQDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.63|      16|      18|     623|     638|       8
---------------------------------------------------------------------------
  623-  638 (26.29/15.54)	SSDPRKVETTRKIISF
  644-  659 (27.34/16.48)	SLDPNNISPQSILLDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.81|      10|     246|    1641|    1650|      10
---------------------------------------------------------------------------
 1641- 1650 (19.58/11.80)	LRPDVQH.LLS
 1889- 1899 (14.23/ 6.19)	LRPDLKRgLLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.53|      18|     267|     142|     160|      11
---------------------------------------------------------------------------
  142-  160 (29.73/23.95)	DFEQLHMQFPDQeQLQAVT
  419-  436 (38.79/26.71)	DMVCMHMQMLDQ.HLHCPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.87|      21|      23|    1541|    1562|      15
---------------------------------------------------------------------------
 1541- 1562 (31.85/21.65)	RPVnSVAMLRIAFRILGPLLPR
 1567- 1587 (36.02/20.02)	RPL.FMKTLALLFNVLGDVFGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.83|      10|      18|     718|     727|      17
---------------------------------------------------------------------------
  718-  727 (20.12/12.48)	MFWVLSFTMA
  735-  744 (19.71/12.05)	MNWFTSVGVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.15|      14|      18|    1911|    1924|      19
---------------------------------------------------------------------------
 1911- 1924 (24.03/17.02)	EQLGNRW.SKIAARL
 1930- 1944 (21.12/13.90)	NEIKNHWnTHIKKKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.50|      13|     222|    1725|    1740|      25
---------------------------------------------------------------------------
  350-  362 (23.71/11.00)	DALQ...LQTLRLERP
 1725- 1740 (19.79/15.50)	DPLQtavVLTLRRQRP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03393 with Med23 domain of Kingdom Viridiplantae
Unable to open file!