<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03392
Description |
Mediator of RNA polymerase II transcription subunit 11 |
Sequence | MLPQSQGSSLQCLNHVEQRIVQLMQLAGAVMEELGNSQGPRPEKVVAHCREYMLAIKEIQTTLREEIKSACEYRPFEKSDYSARIANEISCKKVEYVLEKLDAMQTNIEKCTSHGQSMAAPATTSLLSTLLQLLREEHTRWRWLRRRVASADLLVEDNDWEESIFRRFRQEVMTAGALRRSSAAAGTTCESKKDGPRGRPPQKLCRFCSANGTIMSGCSPQGALVSTAIMRRNVLTRIVGTQKNNLPLPKRSAAIAAPIALLLVVGLISLYDFTFADRYPNIDAASSSSSSSSSPSSATVSKCNLTRGEWVPDGEAPYYTNLTCPFIDDHQNCMKFGKPSLEYVSWRWKPDGCELPRFDAARFLEAMRGKSMAFVGDSLARNHFKSLLCLLSKVAQPVELVGAAPEIDVTGRAVRRDFRYDSHGFTASLFWSPFLVKANLANATLGLWDLHLDTADARWAAHVAEFDYVVLSDTNWFLRPSVYYEGGRAVGRNGAAPVTNANEIAVPRAVRAAFRTALGALAAAPGTFRGKAILRSVTPAHFENGEWNTGGDCVRTRPFRRDERALGAVEAEYLAVQVDAVREAEAAVRRNGGELRLLDITEAMDLRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPIDLWSELLFHMLVDQ |
Length | 654 |
Position | Head |
Organism | Oryza glumipatula |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Oryzoideae> Oryzeae> Oryzinae> Oryza.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.241 |
Instability index | 48.98 |
Isoelectric point | 8.07 |
Molecular weight | 72313.55 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364147
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP03392
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 396.09| 123| 136| 188| 318| 1
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188- 318 (189.55/134.91) TCESKKDGPR....GRPPQKlcrFCSANGTiMSGCS.PQ.GALVSTAIMRRNVLTrIVGTQ..KNNL.PLPKRSAAIAAPIALllvVGLIS.....LYDFT..FADRYPNIDAASSSSSSSSSP..SSATVSKCNLT.....RGEWVPDGEAPY
323- 448 (176.13/104.78) TCPFIDDHQNcmkfGKPSLE...YVSWRWK.PDGCElPRfDAARFLEAMRGKSMA.FVGDSlaRNHFkSLLCLLSKVAQPVEL...VGAAP.....EIDVTgrAVRRDFRYDSHGFTASLFWSP..FLVKANLANAT.....LGLW........
494- 555 (30.41/ 9.86) .......................................................................................GAAPvtnanEIAVP.rAVRAAFR.TALGALAA...APgtFRGKAILRSVTpahfeNGEWNTGGDCVR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 98.21| 30| 530| 46| 75| 2
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46- 75 (53.20/33.53) VAHCREYMLAIKEIQTTLR.EEIKSACEYRP
578- 608 (45.02/27.38) VDAVREAEAAVRRNGGELRlLDITEAMDLRP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.45| 18| 315| 134| 160| 3
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142- 160 (29.55/35.74) RWlRRRVASAD.LLVEDNDW
458- 476 (29.90/11.42) RW.AAHVAEFDyVVLSDTNW
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