<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03390

Description Uncharacterized protein
SequenceMDSDGEEYDAMWSARCGVSSSAGSLQDAGDQWDEQSLAAGEDKVFVAVDEDVEHGKSTFLWALQNLATDGANIVVVHVHSPAQTLSKVHCTRMKPEEISEYLMLAKEEAEKNLDEYALIAKSTGKDMKTDCQKVLIDMDDVAKGLEELITLHGITRLVMGAAADQHYSEEMKEPNSKIALKLMETASPSCKIWFTCNGHLICTREPNENLLAIYVPPAQSNTVPLSMCSISSQMSSIELKNEAPSSEEYTLRSLAQSAMSDWDYIFGDWGRTGYGSLRTDDAISIPEATTLAAIVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMHDILNEACTRAELLKKEVDGESSKRRKAEMDLLIALQRVQESEKSYLQEVNQRKETERTLARQRLEIDEMKRRRNTLYDELQDTKKQKLLLEQHISEIKSAAKDYVQEITEYFIQESCEEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKLCLERLDSSKETKRRRKAESEMLSALKKVHDLEHQYLNELKRREAVEETLAWQKEEIQETKRELNKIRSRHMTEIKAHEENLAESIRFIQKIQAKYDKTLHERDTAIAESEKLCQMNRDGASMIATTQIADFSFFELRQATQDFDTALKIGTGRFMNVYKGFIRNTAITVMLLHPQGLQGQLEFHQEVVVLSRLRHPNVMMLIGACPEAFGMVYEFLPNGSLEDQLSCKKNTPPLTWKMRTRIIGEICSALTFIHSQKPHPVVHGNLNPMNILLDANFVSKLHVCQLLRKYNTGNNTSGTSSYIDPEFLSTGELAPRCDVYSFGIIILHLLTGKSPQNITTIVEDAMEKRQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKDASQNFGCKQAFEALSDDTQAPSYFICPILQEVMTDPHIAADGYTYEANAIRNWLDGGNARSPMTNLSLENRELTPNRVLRSAILEWRQHRR
Length1017
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.579
Instability index52.78
Isoelectric point5.44
Molecular weight115923.17
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03390
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     166.52|      26|      26|     351|     376|       1
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  351-  376 (39.58/24.27)	KKEVDGESSKRRKAEMDLLIALQRVQ
  379-  402 (29.95/16.49)	EKSYLQEVNQRKETERTL..ARQRLE
  451-  475 (32.42/18.48)	.QESCEEAKKFQKIKMDLLAMLQRVK
  482-  501 (30.94/17.29)	RNE......KMQRKDMEEKIARQRME
  528-  553 (33.62/19.45)	RLDSSKETKRRRKAESEMLSALKKVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.40|      66|     123|     796|     875|       2
---------------------------------------------------------------------------
  796-  875 (91.99/99.86)	LLDA..NFvsklhVCQllRKYNT.GNNTSGTSSYIDP...EFLSTGELAprCDVYSF.GIIILHLLTG...KSPqniTTIVedAMEKRQL
  924-  999 (98.41/66.41)	LKDAsqNF.....GCK..QAFEAlSDDTQAPSYFICPilqEVMTDPHIA..ADGYTYeANAIRNWLDGgnaRSP...MTNL..SLENREL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.47|      11|      24|     560|     570|       6
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  560-  570 (17.26/11.86)	LNELKRREAVE
  587-  597 (19.21/14.17)	LNKIRSRHMTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     332.36|     107|     131|      28|     144|       7
---------------------------------------------------------------------------
   28-  144 (156.63/168.08)	AGDQWDEQSLAAGEDKVFVAVDEDVehGKSTFLWALQN...LAT..DGANIVVVHVhSPAQTlskvHCTRMKPEEISEYL..MLAKEEAEKNlDEYALiaKSTGKDMKTDCQKVLIDMDDVAKG
  162-  275 (175.73/147.98)	AADQHYSEEMKEPNSKIALKLMETA..SPSCKIWFTCNghlICTrePNENLLAIYV.PPAQS....NTVPLSMCSISSQMssIELKNEAPSS.EEYTL..RSLAQSAMSDWDYIFGDWGRTGYG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03390 with Med32 domain of Kingdom Viridiplantae
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