<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03389

Description Uncharacterized protein
SequenceMASGEPRPPSPAAVAVAVRPGGSASRRAARWAAANLVPAGDGDGRASAAAISVVHVIPPLRFVPSPCGEQVPAARVAREAAEAYARDRHARAQEALRPFRRIFAAANATVETVVLEGDGVAEALVRYAADSGVRSLVLGSASLGWFRRAMSVPDVATAVLKTTEISCNVFVVSKRRLTLKVTRHPQMSRSGTGLRIQSVSQKAFAQSYRSLLFDNFPENGIHPDSWCQSRVSHCGPTNARQSSESHGQILFNSLGAKTTGIEGYKNHGFRSPFKEAHYSDSNSSEEIQVLSSECSEEARKVEHALQKEEALKQVVADEKAKRLEAIEEVEQAKKSFTREAYSRNKAEMVASMISLDKAKVVDAILSTSKNCRRYKKHEIELATDNFSEARKIGEGGYGNVYRCTLDHTEVAVKVIQQDSIDKTDEFLREVDILSQLQHPNLVLLLGFCPEIGCLVYEYLQNGSLEDQLLNNKGRQPLHWFLRFQIIFDVSCGLAFLHGRKPEPIVHRDLKPANILLNKNYVGKIGDAGFAKLISDLVPDWQTEYKETIIAGTLYYMDPEYQQTGTVRPKSDLFGLGVIILQMLTGKRPNGLIVSVENAIRNGMLADILDKSQTDWPLVEAEMLAKLGLRCTALKCRERPGLESEVLPKLQEILHRITSTVNLRSPKLNVPSHFICPIMQEVMNDPYVAADGHTYEQQAIKAWLKKHKVSPVTRRILPNLSVIPNHSLRAAIQQWKSQSAHAKS
Length743
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.293
Instability index55.05
Isoelectric point9.00
Molecular weight82171.97
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03389
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.05|      61|     225|     383|     449|       1
---------------------------------------------------------------------------
  383-  449 (96.14/89.34)	TD.NFSEARKIGEGGygnvYRCT.LDHTEVAvkVIQQDSIDKTDEFLREVDILSQLQHPNLVLLLGF.CP
  613-  676 (93.92/69.58)	TDwPLVEAEMLAKLG....LRCTaLKCRERP..GLESEVLPKLQEILHRITSTVNLRSPKLNVPSHFiCP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.37|      32|     227|      65|      96|       2
---------------------------------------------------------------------------
   65-   96 (54.43/31.26)	SPCGE...QVPAARVAREAAEAYARDRHARAQEAL
  292-  326 (45.94/25.38)	SECSEearKVEHALQKEEALKQVVADEKAKRLEAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.84|      13|      20|      20|      32|       3
---------------------------------------------------------------------------
   20-   32 (24.72/13.07)	PGGSASRRAARWA
   38-   50 (23.12/11.80)	PAGDGDGRASAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.47|      12|      20|     105|     117|       4
---------------------------------------------------------------------------
  105-  117 (15.29/15.34)	AANATVETVVLeG
  128-  139 (20.18/14.13)	AADSGVRSLVL.G
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03389 with Med32 domain of Kingdom Viridiplantae
Unable to open file!