<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03387

Description Uncharacterized protein
SequenceMASGEPRPPSPAAVAVAVRPGGSASRRAARWAAANLVPAGDGDGRASAAAISVVHVIPPLRFVPSPCGEQVPAARVAREAAEAYARDRHARAQEALRPFRRIFAAANATVETVVLEGDGVAEALVRYAADSGVRSLVLGSASLGWFRRAMSVPDVATAVLKTTEISCNVFVVSKRRLTLKVTRHPQMSRSGTGLRIQSVSQKAFAQSYRSLLFDNFPENGIHPDSWCQSRVSHCGPTNARQSSESHGQILFNSLGAKTTGIEGYKNHGFRSPFKEAHYSDSNSSEECQSIDEVAKLRKELQDTLVMYDKACEDLVHAKKKGVNQIGPENPRTIAVSDKMHCFDLPPVMAAVVGGACDVSPVAKPSWGPGRAWHLPCRHATTPPPTKIQVLSSECSEEARKVEHALQKEEALKQVVADEKAKRLEAIEEVEQAKKSFTREAYSRNKAEMVASMISLDKAKVVDAILSTSKNCRRYKKHEIELATDNFSEARKIGEGGYGNVYRCTLDHTEVAVKVIQQDSIDKTDEFLREVDILSQLQHPNLVLLLGFCPEIGCLVYEYLQNGSLEDQLLNNKGRQPLHWFLRFQIIFDVSCGLAFLHGRKPEPIVHRDLKPANILLNKNYVGKIGDAGFAKLISDLVPDWQTEYKETIIAGTLYYMDPEYQQTGTVRPKSDLFGLGVIILQMLTGKRPNGLIVSVENAIRNGMLADILDKSQTDWPLVEAEMLAKLGLRCTALKCRERPGLESEVLPKLQEILHRITSTVNLRSPKLNVPSHFICPIMQEVMNDPYVAADGHTYEQQAIKAWLKKHKVSPVTRRILPNLSVIPNHSLRAAIQQWKSQSAHAKS
Length843
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.299
Instability index56.51
Isoelectric point8.94
Molecular weight93010.46
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03387
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.99|      29|      35|     772|     802|       1
---------------------------------------------------------------------------
  772-  802 (46.17/32.31)	HFICPIMQEVMNDPYVAADgHTYeQQAIKAW
  806-  834 (50.82/27.13)	HKVSPVTRRILPNLSVIPN.HSL.RAAIQQW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     238.41|      74|     329|       8|     124|       2
---------------------------------------------------------------------------
    8-   96 (118.79/104.47)	PPSPAAV...AVAVRPGGSASRraarwaaanlvpagdGDGRASAAAISVVHVIPP..LRFVPSPCGE...QVPAARVAREAAEAYARDRHARAQEAL
  345-  426 (119.62/49.60)	PPVMAAVvggACDVSPVAKPSW...............GPGRAWHLPCRHATTPPPtkIQVLSSECSEearKVEHALQKEEALKQVVADEKAKRLEAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.00|      12|     330|     327|     344|       3
---------------------------------------------------------------------------
  303-  314 (22.75/14.20)	TLVMYDKA.CEDL
  332-  344 (18.25/ 9.52)	TIAVSDKMhCFDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.91|      28|      39|     681|     712|       5
---------------------------------------------------------------------------
  681-  712 (43.22/38.64)	QMLT..GKRPNGLivsvENAIRNGMLADILDKSQ
  721-  750 (44.69/29.90)	EMLAklGLRCTAL....KCRERPGLESEVLPKLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.47|      12|      21|     105|     117|      10
---------------------------------------------------------------------------
  105-  117 (15.29/13.54)	AANATVETVVLeG
  128-  139 (20.18/12.45)	AADSGVRSLVL.G
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03387 with Med32 domain of Kingdom Viridiplantae
Unable to open file!