<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03386

Description Uncharacterized protein
SequenceMASGEPRPPSPAAVAVAVRPGGSASRRAARWAAANLVPAGDGDGRASAAAISVVHVIPPLRFVPSPCGEQVPAARVAREAAEAYARDRHARAQEALRPFRRIFAAANATVETVVLEGDGVAEALVRYAADSGVRSLVLGSASLGWFRRAMSVPDVATAVLKTTEISCNVFVVSKRRLTLKVTRHPQMSRSGTGLRIQSVSQKAFAQSYRSLLFDNFPENGIHPDSCLGAKTTGIEGYKNHGFRSPFKEAHYSDSNSSEECQSIDEVAKLRKELQDTLVMYDKACEDLVHAKKKGVNQIGPENPRTIAVSDKMHCFDLPPVMAAVVGGACDVSPVAKPSWGPGRAWHLPCRHATTPPPTKIQVLSSECSEEARKVEHALQKEEALKQVVADEKAKRLEAIEEVEQAKKSFTREAYSRNKAEMVASMISLDKAKVVDAILSTSKNCRRYKKHEIELATDNFSEARKIGEGGYGNVYRCTLDHTEVAVKVIQQDSIDKTDEFLREVDILSQLQHPNLVLLLGFCPEIGCLVYEYLQNGSLEDQLLNNKGRQPLHWFLRFQIIFDVSCGLAFLHGRKPEPIVHRDLKPANILLNKNYVGKIGDAGFAKLISDLVPDWQTEYKETIIAGTLYYMDPEYQQTGTVRPKSDLFGLGVIILQMLTGKRPNGLIVSVENAIRNGMLADILDKSQTDWPLVEAEMLAKLGLRCTALKCRERPGLESEVLPKLQEILHRITSTVNLRSPKLNVPSHFICPIMQEVMNDPYVAADGHTYEQQAIKAWLKKHKVSPVTRRILPNLSVIPNHSLRAAIQQWKSQSAHAKS
Length816
PositionTail
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.277
Instability index56.59
Isoelectric point8.91
Molecular weight90014.27
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03386
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.99|      29|      35|     745|     775|       1
---------------------------------------------------------------------------
  745-  775 (46.17/37.23)	HFICPIMQEVMNDPYVAADgHTYeQQAIKAW
  779-  807 (50.82/31.27)	HKVSPVTRRILPNLSVIPN.HSL.RAAIQQW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.11|      17|      26|      94|     115|       2
---------------------------------------------------------------------------
   94-  115 (21.06/23.91)	EALrpfrrIFAAANATVETVVL
  122-  138 (28.05/16.08)	EAL.....VRYAADSGVRSLVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.93|      31|      37|     369|     399|       3
---------------------------------------------------------------------------
  369-  399 (47.63/34.18)	EEARKV....EHALQKEEALKQVVADEKAKRLEAI
  403-  437 (43.30/30.41)	EQAKKSftreAYSRNKAEMVASMISLDKAKVVDAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.91|      28|      39|     654|     685|       4
---------------------------------------------------------------------------
  654-  685 (43.22/36.01)	QMLT..GKRPNGLivsvENAIRNGMLADILDKSQ
  694-  723 (44.69/27.85)	EMLAklGLRCTAL....KCRERPGLESEVLPKLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.40|      16|      26|      36|      51|       7
---------------------------------------------------------------------------
   20-   33 (18.57/ 7.49)	..PGGSASRRAARWAA
   36-   51 (26.76/13.99)	LVPAGDGDGRASAAAI
   62-   76 (26.07/13.44)	FVPSPCGE.QVPAARV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.42|      19|      26|     206|     225|       8
---------------------------------------------------------------------------
  206-  225 (31.06/26.35)	QSYRSLLFDNfPENGIH.PDS
  235-  254 (31.37/20.59)	EGYKNHGFRS.PFKEAHySDS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03386 with Med32 domain of Kingdom Viridiplantae
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