<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03379

Description Uncharacterized protein
SequenceMTHRHTPRRPTVPDSKGQSRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQSWGTAPGQNVPLVQPGHQPMSSSTTMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMVAPSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPFLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEPVTYANKLEAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKLEAEERRIKQRKARDDFLAMLEESKELTSSTRWSKAITMFEDDERFSAVERPREREDLFESYLMELQKKERARAAEEHKRHIAEYRAFLESCEFIKTSTQWRKVQERLEDDERCSRLEKIDRLEIFQEYIRDLEKEEEEHKRIHKEQVRRQERKNRDEFRKMLEEHVAEGMLTAKTRWRDYCAQVKDSSVYLAVASNISGSMPKDLFEDVMEELEKQYQDDKARIKEAVKSGKIPMTTSWTLEDFETAVTEDDTLKGITNINMKLIFDDQVERLREKEVKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKALFDDSQEYKALDSETYSRELFEECVVHLKERLKEKERLREEEKARKEKEREDKERRKEKEKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
Length952
PositionUnknown
OrganismOryza glumipatula
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-1.259
Instability index54.54
Isoelectric point6.18
Molecular weight109579.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03379
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.90|      40|      40|     148|     187|       1
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  148-  187 (75.60/43.29)	SS...DWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERAD
  189-  228 (71.66/40.65)	ST...EWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELAE
  231-  261 (30.63/13.18)	SNprpDQETETTAGAPSGPTSNSVEPSS..VPA..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.23|      18|      18|     799|     816|       2
---------------------------------------------------------------------------
  583-  600 (22.50/ 8.05)	EHKRIHKEQV.RRQERKNR
  799-  816 (29.29/12.88)	EKARKEKERE.DKERRKEK
  819-  837 (23.45/ 8.73)	EKERKEKERDkEKEREKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     193.14|      39|      40|       7|      46|       3
---------------------------------------------------------------------------
    7-   46 (76.23/52.37)	PRRPTVPDSKGQSRPPmMGSSVPP...QNLGPP..MPMQF.RPVIH
   50-   87 (61.81/37.05)	P..PQFMQPGQQFRP..VGQAMPG...ANIGMPgqMP.HFqQPTQH
   89-  125 (55.10/32.18)	PHSGQVPPA.SQAYQP...SSVPPpivQSWG.T..APGQN.VPLV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     159.80|      23|      23|     431|     453|       4
---------------------------------------------------------------------------
  346-  368 (26.31/13.89)	QNGA...SAEELEEAKKTM...A........VPGKIN
  374-  404 (17.07/ 6.06)	DKTS...EEEPVTYANKLE...AknafkallESSNVE
  409-  430 (23.52/11.52)	WDQA...MRVIIND.KRYG...A........LKTLGE
  431-  453 (35.40/21.58)	RKQA...FNEYLNQRKKLE...A........EERRIK
  454-  479 (20.50/ 8.96)	QRKArddFLAMLEESKELT...S........STRWSK
  486-  498 (17.36/ 6.30)	DDER...FS.............A........VERPRE
  499-  521 (19.64/ 8.24)	REDL...FESYLMELQKKErarA........AE...E
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.47|      40|      46|     842|     884|       5
---------------------------------------------------------------------------
  842-  882 (68.39/42.78)	SRKDEMDiDAVDADSHGSKDKKREK.......DKEKKHKRRHHD........TADD
  885-  939 (58.09/26.82)	SERDEKD.DSKKSRRHSSDRKKSRKhthasdsDSENRHKRHKKDrdssrrngTRDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     123.00|      37|      45|     708|     745|       6
---------------------------------------------------------------------------
  669-  722 (40.36/31.16)	IK....EAVKSGKIPmttswtlEDFEtavtedDTLKGITN.......inmKLIFDDQvERLREKE
  723-  764 (45.27/30.56)	VK....EAKKRQRLG.......ENFS......DLLYSIKEisasstwddsKALFDDS......QE
  765-  793 (37.37/23.80)	YKaldsETYSR...........ELFE......ECVVHLK...................ERLKEKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.49|      16|      19|     280|     296|       8
---------------------------------------------------------------------------
  280-  295 (30.74/14.72)	NSVPPGAGPSHNMENT
  300-  315 (25.75/11.52)	NTAMQNGGPSTVVTPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.26|      12|      74|     543|     554|      10
---------------------------------------------------------------------------
  543-  554 (21.61/14.48)	TQWRKV......QERLED
  559-  576 (13.65/ 6.31)	SRLEKIdrleifQEYIRD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03379 with Med35 domain of Kingdom Viridiplantae
Unable to open file!