<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03371

Description Uncharacterized protein
SequenceMLQNAATVGQNAQQIQMQMQSPQMHGAHQNNVVRMQHSDHPGVQNNHEQIKMSPPQKPMTLPPLQTAADQQSNSPSINPQTPTMIESVGEVDWREKLFQSITTLKAAHFSELMDLDKTMIQRKLTDDELQSLPEKEAKSYKFREKVKTKTMTALNFLQIQKSHIDEHTEEKFHRQENTIKFLISLHRERNDKIAGMIGSRQSQECHDLRQLLQTPNHPTDDPSQSSPPNPSRDQRDDEQEKTEETSISQSVHNYNCDDTTTPSIDSVPQQNNTNNDNLAGQSEDEAAVVPKKRPIDHLIDSDAAAAAAQSPAMEVQQIDTACFMCLEQRPYYDHHLLNGEFKPQKRQKTDNNDSPLQREIDAINDKLIDTVITIVTDDVVGKEDDETKKTHPKAKPTTIKFRYTAVSVSPEVRQLLTSSAGSSLVKEMKLSVPADYPQSSPVIVEYEQPQGGRYGEIAQAVEAAFRRALGELPQPMSIEQMARAWDAAVRGVVTEIAQRDGGGTFSSEYGEWESCE
Length516
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.04
Grand average of hydropathy-0.865
Instability index61.19
Isoelectric point5.21
Molecular weight57997.83
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03371
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.45|      21|      32|       2|      23|       1
---------------------------------------------------------------------------
    2-   23 (33.57/25.28)	LQNAATVG.QNAQQiQMQMQSPQ
   35-   56 (37.88/23.86)	MQHSDHPGvQNNHE.QIKMSPPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.12|      31|      34|     264|     294|       2
---------------------------------------------------------------------------
  264-  294 (52.35/34.91)	IDSVPQQNNTNNDNLAGQSEDEAA.VVPKKRP
  299-  330 (48.77/32.01)	IDSDAAAAAAQSPAMEVQQIDTACfMCLEQRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     168.96|      39|      93|     111|     149|       3
---------------------------------------------------------------------------
  111-  149 (62.95/32.60)	ELMDLDKTMIQ..RKLTDDELQSLPEKEAKSYKF.....REKVKTK
  150-  192 (48.91/23.93)	TMTALNFLQIQ..KSHIDEHTEEKFHRQENTIKFlislhRER.NDK
  204-  243 (57.10/28.99)	ECHDL.RQLLQtpNHPTDDPSQSSPPNPSRDQRD.....DEQEKTE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03371 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLQNAATVGQNAQQIQMQMQSPQMHGAHQNNVVRMQHSDHPGVQNNHEQIKMSPPQKPMTLPPLQTAADQQSNSPSINPQTPTMIE
2) NDKIAGMIGSRQSQECHDLRQLLQTPNHPTDDPSQSSPPNPSRDQRDDEQEKTEETSISQSVHNYNCDDTTTPSIDSVPQQNNTNNDNLAGQSEDEAAVVPKKRPIDHLIDSDAAAAAAQSPAM
1
190
86
313










Molecular Recognition Features






MoRF SequenceStartStop




NANANA