<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03370

Description Uncharacterized protein
SequenceMDHDGRLRRALAAFGGGGADVLWDLVDAALAAAARXXXXXXXXXARDRPAELRARRDGIVERLYAAAGSGRCRSCDAPRSAAAAMADASPASADEEEADVDGLPNGEDDDGGGGAGMESKILAIRDFLEDPDQSEDELVSLLQCLADMDITYKALQETDIGRHVNGLRKHPSGEVRQLVKLLVRKWKDIVDDWVRRHNSGGDGGNSVLTDGDSPDKIQGRNYQNVQVSDFKYSPSPQRHKRSSNNNGIEPMVEKRRTSPAPTYHNNKQNNSIGYSTTSSSGPARTVREQKDTLMDLEKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNTFIRKGGGSLPAKHR
Length352
PositionUnknown
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.04
Grand average of hydropathy-0.889
Instability index58.82
Isoelectric point7.10
Molecular weight37662.31
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03370
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     165.04|      43|      43|     199|     241|       1
---------------------------------------------------------------------------
  199-  241 (77.67/45.27)	SGGDG.GNSVLTDGDSPDKIQGR...NYQN.........VQVSDFKY....SPSPQRHKR
  243-  287 (57.19/31.68)	SNNNGiEPMVEKRRTSPAPTYHN...NKQN.........NSIG...YsttsSSGPARTVR
  289-  334 (30.18/13.75)	......QKDTLMDLEKLDSARKRlqeNYQEaqnakkqrtIQVMDIHD....IPKPK....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     200.58|      54|      57|      73|     127|       2
---------------------------------------------------------------------------
   27-   70 (29.41/12.16)	...DAALAAAA..rxxxxxxxxxARDRPA...ELRARRDGIVERLYAAAGSG.............
   73-  127 (88.10/56.20)	RSCDAPRSAAAAM..........ADASPASADEEEADVDGLPNGEDDDGGGGAGMESKILaIRDF
  133-  186 (83.07/48.79)	QSEDELVSLLQCL..........ADMDITYKALQETDIGRHVNGLRKHPSGEVRQLVKLL.VRKW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03370 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAMADASPASADEEEADVDGLPNGEDDDGGGGA
2) WVRRHNSGGDGGNSVLTDGDSPDKIQGRNYQNVQVSDFKYSPSPQRHKRSSNNNGIEPMVEKRRTSPAPTYHNNKQNNSIGYSTTSSSGPARTVREQKDTLMDLEKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNTFIRKGGGSLPAKHR
83
193
115
352










Molecular Recognition Features






MoRF SequenceStartStop




1) YGRPAMPY
304
311