<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03369

Description Uncharacterized protein
SequenceMSKEEVLKIQTCVLKVNIHCDGCQKKVKKILHKIEGVYQTSVDAEQGKVTVSGLVDPATIIKKLNKAGKPAELWGSKGGSNEIPVQIKGNAAGGGGGGGKKDSGGKQHQGGGGGNVKNSSGVQQNNGKGGGGAANSGGNHPAAQGKRGGGGVGLVGSAGGPMGGMPAQQQAMMRPNMMGGGSAGFPGIGQMGGGPITMPQMAHHHPQMGNGAGAGAVQGMPSAAFFQGGGGGGGGMPSAPEVLQAAAAAGNPMAQQQYMAMMQQQQQQHQQMMMNGHHGHGQHGHHHGYGSGAPAGYPAMGYGYGRPAMPYPMSYPMQPHPHADPYNYFSDENPSSCSTCSGKYASTSYRGSLYSKELVDTSVYFCRSYVVPVKYTCAVEEFPWSALMEGLPLMALKDALMVTPGSSLAELQKLQPFSVSWSDEEKLALSKILCGTSLHGWNIQVPDLAAVFMPLLKYLDPYFRLIIGDAVLKRLLCTQYSHVLSCAFFARGNFTHPLWSMHYQNMEPLFVQSSVWTLSCYYEIIVLL
Length528
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.08
Grand average of hydropathy-0.276
Instability index45.07
Isoelectric point8.85
Molecular weight55541.87
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03369
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     342.37|      75|      79|     127|     205|       2
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   47-   93 (48.70/10.64)	.......................GKVTVSGLVDPAT..IIKKlnkAGKPAELWGS..........KGGS..N...EIPVQ......IK...........GNAAG.
  108-  185 (141.85/49.19)	HQGGGGGNVKNSSGVQqnnGKGGGGAANSGGNHPAA..QGKR...GGGGVGLVGS..........AGGP.MG...GMPAQQQ..AMMR......PNMMGGGSAGF
  190-  280 (107.54/31.07)	QMGGGPITMPQMAHHHpqmGNGAGAGA.VQGMPSAAffQG.....GGGGGGGMPSapevlqaaaaAGNP.M.......AQQQymAMMQqqqqqhQQMMMNGHHGH
  281-  316 (44.28/ 8.99)	....G.....QHGHHH..............................GYGSG..AP..........AGYPaMGygyGRPAMPY..PMSY......P..........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03369 with Med33 domain of Kingdom Viridiplantae
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