<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03367

Description Uncharacterized protein
SequenceMDRDGRLRRALAAFGGGVWELVDAVLDSAARDRPDELRARRDGIVERLYAAGGGGCRNCGATASPSPVVEGEEDDEAAPEEDGIEIKILAIKDFLEDQDQSEEDLLSLLQNLADMDITYKALQETDIGRHVNGLRKHPSGEVRLLVKQLIRKWKEIVDDWVRLHNSSGDGSNPIITDGDSPEKIQGKNQQSTQVSEFKYSPSPHRHYNSSSERVNNGIASIAATKHRPSPVPVHHNARQINSTHHSSTSSSAPARVVKEQKDSPLDIEKLDSARKRLQENYQEAQNAKKQRTIQVMDINEIPKPKNRNALVRKGNGGGFPARHRATLRLPAVVAFDSLKDLTLGFITLADGIGRRHLGNLLSSTSCPCLQKLRLMEIDGMEALRLNAGELLEFSLSVRSSMFGIGPSMYLLEVNTPKLRVLRAGGWHIGEITFSAPMLEDVRFTFRHLNSIKLLSVSELTHVRSLKGIELKTERPHIHGYRPNDSTIRLMRQCTSVECVSVSLQFAQWHYARGLEEVYIIKDIPPLSYVTSLSIEAFPHSFPQDKHDIIAAISCLLTQCSSLRYLELKPIFALKKDGGDQTISKEHINIKLPNLQVIVISGFGGRLDEASVIEWLHATAPSLRRINLNFVSSKGARRNSESCYLKSPLLRLAIVLTVICA
Length660
PositionUnknown
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.05
Grand average of hydropathy-0.358
Instability index60.11
Isoelectric point8.53
Molecular weight73387.81
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03367
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.85|      36|      37|       9|      44|       1
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    3-   40 (57.42/33.32)	RDGRlrRALAAFGGGVWELVDAVLDSA..ARDRPDELRAR
   41-   80 (57.43/33.33)	RDGIveRLYAAGGGGCRNCGATASPSPvvEGEEDDEAAPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     401.03|     116|     220|     298|     414|       2
---------------------------------------------------------------------------
  298-  414 (191.00/116.83)	INEIPKPKNRNALVRKGNGGGFPA.RHRATLRLPAVVA.FDSLKDLTLG..FITLADGiGRRHLGNLLSSTSCPCLQKLRLMEIDGMEALR.LNAGELLEFS.LSVRSSMFGI.....GPSMYLLEVN
  424-  483 (51.17/24.99)	...........................................................GGWHIGEI..TFSAPMLEDVRF.......TFRhLNSIKLLSVSeLTHVRSLKGIelkteRPHIHGYRPN
  520-  628 (158.86/92.86)	IKDIPPLSYVTSLSIEAFPHSFPQdKHDIIAAISCLLTqCSSLRYLELKpiFALKKDG.GDQTISKEHINIKLPNLQ...VIVISGFGG.R.LDEASVIEW........LHAT.....APSLRRINLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.86|      18|      80|     164|     181|       6
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  164-  181 (34.79/20.80)	HNSSGDGSNP...IITDGDSP
  244-  264 (28.07/15.50)	HHSSTSSSAParvVKEQKDSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03367 with Med26 domain of Kingdom Viridiplantae
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