<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03364

Description Uncharacterized protein
SequenceMGDGRVGGGANRPAWLQQYELVGKIGEGTYGLVFLARLKPSHPHAAAGVGRRGPPIAIKKFKQSKEGDGVSPTAIREIMLLREINHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHREKLTHPINIYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGIIKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGVEAKATPNPFQLDQLDKIFKVLGHPTIEKWPTLANLPCWQNDQQHIQGHKYENPGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEYFRMDPLPGRNALLPSQAGEKIVQYPVRPVDTTTDFEGTTSLQPTQPPSGNAPPGSQSVVPRPIPRQMQQPMVNMSRMTGANMAAFNAASQAGMAGLNPGNIPMQRGAGAQSHPHQLRRKADQGMGMQNPGYPNQQKRRF
Length475
PositionKinase
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.07
Grand average of hydropathy-0.404
Instability index39.52
Isoelectric point9.37
Molecular weight52963.29
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03364
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.65|      22|      44|       2|      28|       1
---------------------------------------------------------------------------
    2-   28 (32.29/28.52)	GDGRVGGganrPAWLQQYELvGKIGEG
   48-   69 (40.37/21.07)	GVGRRGP....PIAIKKFKQ.SKEGDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.81|      18|      44|     343|     361|       3
---------------------------------------------------------------------------
  343-  361 (28.55/18.22)	PGRNALLPSQAGEKIvQYP
  389-  406 (33.26/17.58)	PGSQSVVPRPIPRQM.QQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.15|      18|      42|     230|     251|       5
---------------------------------------------------------------------------
  230-  251 (27.39/26.08)	F..............AELltlkPLFQG....VEAKATPNP
  261-  296 (22.76/12.05)	FkvlghptiekwptlANL....PCWQNdqqhIQGHKYENP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.91|      26|      28|     415|     441|       7
---------------------------------------------------------------------------
  415-  441 (44.30/24.05)	GANMAAFNAASQA..GMAGLNPGnIPMQR
  444-  471 (46.61/21.48)	GAQSHPHQLRRKAdqGMGMQNPG.YPNQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03364 with CDK8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALLPSQAGEKIVQYPVRPVDTTTDFEGTTSLQPTQPPSGNAPPGSQSVVPRPIPRQMQQPMVNMSRMTGANMAAFNAASQAGMAGLNPGNIPMQRGAGAQSHPHQLRRKADQGMGMQNPGYPNQQKRRF
347
475










Molecular Recognition Features






MoRF SequenceStartStop




1) HPHQLRRKAD
2) IAIKKF
3) PGYPNQQKRRF
448
56
465
457
61
475