<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03362

Description Uncharacterized protein
SequenceMATQDEVENHDPTVTVGVTVSSSKSSKYAVKWALENFCAKEMVKFMLIHVLQKVTTVPTPMGNYIPIDKVRSDIASAYEKEVECKARTMLLFYKNMCDEKAQAEVLVVKGEDVAETISNVVLTYEIHKLVVGVSSQGNFVRKSKGTRTSSQICKSVPSICAVYVVSKGGLSAVYSPGSGHKSSELLLSNDSSKSEIHSDDKPSLSDATPLRSSRSNLSWENLDSLSSADHDRPRSLHEYLTESTSTSAGDNNRSSTPCVSGQTPRPSNVLISDKATMASSPLQELMHSEDLDDVNSELEKLRLELRHIKGVCKIVQDESINASQHVIDLAAKRTEEEARLKEVHSRINRVNEEARQEKEQRDTLEAQCRHVRDLARKEALQKQILQLRASKEADKMQRLEKLLESDGMSYSTFTWGEIESATSSFSEALKIGSGSNGTVYKGNLHQISVAIKVLTSDDSHRIKHFKQELEILGKIRHPHLLLLIGACLDRPCLVYEYMENGSLEDRLQCKGGTAPLPWYQRLRIAWEITLALVYLHSSKPKPIIHRDLKPANILLDSKFTSKIGDVGLSTLLPLGDALSATRTIYKDTDLVGTLFYMDPEYQRTGQVSTKSDTYALGMVLLQLLTAKPPMGLADLVEQAVENGNLVDMLDKRAGKWPAQEAHELAQLGLSCLEMRSKHRPDLKCKVLVELERLNDFASAVSDPVQPMISGPPSHFLCPILKRVMQDPCIASDGYSYDWVAIEMWLCENDVSPITKSRLPNKDLVPNHALLCAITSWKAEARS
Length782
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.05
Grand average of hydropathy-0.349
Instability index41.98
Isoelectric point6.32
Molecular weight86914.23
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03362
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.87|      17|      18|     191|     207|       1
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  191-  207 (30.38/17.88)	SSKSEIHSDDKPSLSDA
  212-  228 (28.50/16.32)	SSRSNLSWENLDSLSSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     379.94|     126|     143|     402|     542|       2
---------------------------------------------------------------------------
  402-  542 (187.35/167.79)	LLESDGMSYSTFTwGEIesATSSFSEALKIGS..GSNGTVYKG.NLhqisVAIKVLTSDDSHRIKHF..KQELEILGKIrhphLLLLIGAC..LDRPCLVYEYMENGSLEDRLQCKGGTAPLPWYQRLRiawEITLALVYLHsSKPKP
  548-  680 (192.59/127.15)	LKPANILLDSKFT.SKI..GDVGLSTLLPLGDalSATRTIYKDtDL....VGTLFYMDPEYQRTGQVstKSDTYALGMV....LLQLLTAKppMGLADLVEQAVENGNLVDMLDKRAGKWPAQEAHELA...QLGLSCLEMR.SKHRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.71|      16|      43|     324|     343|       4
---------------------------------------------------------------------------
  324-  343 (21.55/25.16)	QHVIDLAAKrteeEARLKEV
  369-  384 (28.16/19.60)	RHVRDLARK....EALQKQI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03362 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EARLKEVHSRINRVNEEARQEKEQRDTLEAQC
2) HDRPRSLHEYLTESTSTSAGDNNRSSTPCVSGQTPRPSNVLISDKATMASSPLQELMHSEDLDDV
3) SELLLSNDSSKSEIHSDDKPSLSDATPLRS
337
230
183
368
294
212










Molecular Recognition Features






MoRF SequenceStartStop




NANANA