<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03361

Description Uncharacterized protein
SequenceMQRYTGAGHNAGFGAGVPGRGAVAGGREKDRPEPSSFHGSNYPLNSRWKPLASPYKLKCDKEPLNARLGAPDFYPQTSNCPEETITKEYVQSGYKDTVEGIEEAKEIVLSQIPYFSRPDIATKCKEALKKQFRAINESRAQKRKAGQVYGVPLSGSLLTKPGIYPEQMHSNEDTRRKWIEALAQPNRSLWSLAEQVPRGFRRKSLFNHLIRYNVPLLRASWLVKVTYLNQVQPSSNDISPVSPDNLRAHHWTKDVIEYLQQLLDELCSKNGGFAPPSSQEQPLPCLIAGDSPTKLKTGASPAGTDVEEPSLHFKCSYMTRIVQWHLMEQLLVPSSLIEWVFDQLQERNSVEVLEFLLPIVLALVDSITLSQTYVHMLVEILIQRLSDVSPGSLSIKNVTKRSSTTTALVELLQYLVLAVPDTFVSLDCFPLPSVVAPDVYGKGALLKTTGSGRITNSARQNASRNFSCGYAICSVQKRASDLSSVANPNLQVRGAANVVQALDKALVTGNLTAAYKSVFNSLSDTLMEETWIKEVTPCLLSSLMWMGTVELSLVCSVFFICEWATCNFRDCRTSQFQNVKFSGSKDFSQVYMAVHLLKNKMDEINSLSSSKSSSELAMNNHLNSGTLNQSSIKVTGMVNAYGFIDNTKSINENNKKDTFSSPSPLHDIIVCWLNQHEITNASEFKVVDILMMELIRSGIFYPQMYVQQLIVSGITNRNDTLFDLERKTRHYKILKHLPGFCLYDILEEAGIAEDQTLSETVSTYSSERRLVLCELSSGLATDVNVEGRVPLSSCLRKLTDLKMDSRDDNHGRVPNQVKEVKFMISSMLNFGYSTLLAESGREQIKTNQKGQTSSINSEDDVEYAKTGCKDSSRTKRQKLDKDMFPFQGSPLVQSDEEDVWWVRKEQKQELFTLETIHQSVKETSRDKAATGQKTQNLAQHAADRIDGSQGASTSHVCDNKLSCPHHKPGTNSNNLKDVDHTSTLTLAEVGKSLKRLRLLERRSISIWLLKSIKQLIVGDETKHSDITVRNGEIASQWRFGEDELLSVIYIMDICCDLLSAIRLIIWLLSKVYIGTNMSGQVGRGIMPPEHKENQVFQGTEGFLFASLLRYENILLATDLLPEVLSVSINRNVHKSGASQSASVAFAYARYFLKKYRDVASVARWERNFRSTSDKSLLAELDSGRSITGDSIISGISAGEELDGHVHQKLNGKTGVLPSMKEIVQRQTEKVACILKGKNPTAPKNPSYSETEDSYQIAHEIVLGLAECIRQNGGVSLDGDYSLVASAVSAIVGNAGHAIAKHLDNFGGTYPGVTSSNSSNLIRHTLDVHINLLSLLKEALGEQFSRVFEISLAVEASSAVAPSFAPPKSHQSQCEQSSETHDAHGNHANEVACNSSKCFDVKTVKVAAAVSALVVGAIVRGVVSLERMIVVLRLKEGLDILQFLRIFKGSTNGVVHTIGNSKMDSSTEVLVHWFKILIGNCKTVYDGVIAEILGDYYVLAFSKLQRTLPLTMVLPPAYSIFAMVLWRPYLVKTSTSNHHDSQLNQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDLEFAAIVTMGNDGTYALEPGHAEVSTKNDAKFPERLIEILNVLQPAKFHWQWVELRLLLDEQSLIEKPKTTPYVKALRTLSPNAEGFSLSEREKGLTEIILSRLLVRPDAAPLYSELVHLLGKLQESFVMGIKWFLQGQDVLLGNNSVRQQLINLTQRKGFPMKRQYWKPWGWSKLIRYVDANKSSKRKLEVDSIEEREVDGLVDARKTSNSKLQNVVINPEEHGSTQKYLTQEALAELVLPCIDRSSTEFRFVFANDLIKHMGVISEHIRAAVWNGIKLTSSSPSGNEGLSKPNGRKGICGGSPNIGKHNPVPNDSTTPSASSLRSSIWLRLQFIIRLLPVIISDSNMRQTLASSILGLLGTRVVYEDADSLEPYSDVLVDCPSESLFERLLCVLHALLGNSRPSWLKTNPGTKPAVKFSRDLSAIDKEVVKSLQSALDRMELPATIRRRIQVAMPILPTSCLPSITCGPPLLSSAALLPFQCSTSTAAGPQQQFPDSWVPTNLSSRSKAALPSQDPDMKIDPWTLLEDGTNCPNTNSVSSSASGVTGDHANLKACSWLKDSVRMRRTNLTYVGPLDEDS
Length2161
PositionKinase
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.07
Grand average of hydropathy-0.241
Instability index44.94
Isoelectric point7.94
Molecular weight239427.34
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03361
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.29|      21|      21|    2065|    2085|       1
---------------------------------------------------------------------------
 2046- 2066 (34.57/17.78)	SITCGPPLLSSAALL.PFQCST
 2067- 2087 (39.24/21.21)	STAAGPQQQFPDSWV.PTNLSS
 2089- 2107 (23.49/ 9.66)	SKAALPSQD.PDMKIdPWTL..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.20|      20|      21|    1760|    1779|       2
---------------------------------------------------------------------------
 1760- 1779 (32.53/20.78)	VDANKSSKRKLEVDSIEERE
 1784- 1803 (33.67/21.77)	VDARKTSNSKLQNVVINPEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.65|      16|      23|     581|     596|       3
---------------------------------------------------------------------------
  581-  596 (29.46/20.45)	FSGSKDFSQVYMAVHL
  607-  622 (27.19/18.21)	LSSSKSSSELAMNNHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.34|      17|      22|    1457|    1473|       6
---------------------------------------------------------------------------
 1457- 1473 (33.17/23.13)	IGNSK..MDSS.TEVLVHWF
 1477- 1496 (22.17/12.60)	IGNCKtvYDGViAEILGDYY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.49|      10|      15|    1141|    1151|       7
---------------------------------------------------------------------------
 1141- 1151 (14.36/18.44)	ASVAfAYARYF
 1159- 1168 (20.14/17.12)	ASVA.RWERNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.61|      15|      21|    1903|    1923|      10
---------------------------------------------------------------------------
 1903- 1920 (18.39/20.96)	SSLRSSIwlrLQFIIRLL
 1927- 1941 (24.23/ 7.38)	SNMRQTL...ASSILGLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.63|      11|      26|    1278|    1288|      11
---------------------------------------------------------------------------
 1278- 1288 (18.74/10.66)	GDYSLVASAVS
 1307- 1317 (20.89/12.82)	GTYPGVTSSNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     353.08|     134|     146|     178|     323|      12
---------------------------------------------------------------------------
  177-  253 (79.86/61.39)	..........................................................................KW..IEALAQPNrSL..WSLaEQVPrgfRRKSLfnHLIRYNVPLLRA...SWLVKVTYLNQ.VQPSSNDISPVSPDNLRAHHWTK
  254-  400 (199.21/132.36)	DVIEYLQQLLdeLCSKNgGFAppSSQEQPLPCLIAGDSPTK...LKTGASPAGTDV..EEPSLHFKCSYMTRIVQWhlMEQLLVPS.SLieWVF.DQLQ...ERNSV..EVLEFLLPIVLAlvdSITLSQTYVHMlVEILIQRLSDVSPGSLSIKNVTK
  407-  476 (74.01/36.47)	ALVELLQYLV..LAVPD.TFV..SLDCFPLPSVVAPDVYGKgalLKTTGSGRITNSarQNASRNFSCGYAICSVQ....................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.75|      14|      18|    1575|    1592|      15
---------------------------------------------------------------------------
 1575- 1592 (18.94/20.76)	AADVGDLEfaaiVTMGND
 1596- 1609 (24.81/14.72)	ALEPGHAE....VSTKND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.93|      11|      18|    1171|    1181|      17
---------------------------------------------------------------------------
 1171- 1181 (18.35/11.30)	TSDK.....SLLAELD
 1187- 1202 (13.58/ 6.10)	TGDSiisgiSAGEELD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03361 with Med12 domain of Kingdom Viridiplantae
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