<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03360

Description Uncharacterized protein
SequenceMDSRQGGDRPPAAAEIAGGVVEAAAAAAAANNNRVFVALPAQHKSGKSTLSWALRHLADVAPAAAVVVAHVHSPAQMIPMSMGAKFHASKLRPEQVSNYRKYEREEMEKNLNEYLEQCSRMKVKCEKIIIENEHIAKGIVELILLHGVTKLVMGAAADKQYSRKMKLPKSKTAIEVMQNANPSCKIWFVCKEHLIYSTREFVVPISPNAQSPITSRGSSNLSALGGTTNQTANNAVNGYIQRSMSEKVVPAASRTSLQMHSRSTLQETIGSLNMESTSVDSWDSIPRGNFPSSYRTSSTVTEELSSNSSSSGIPRDDISTLASCDFSNSAPHHLQGDTDSNTNLFGKLEEAFTEAEKHRKLAYDESLRRQKTEEELILYHQKVRKSEDLFLNESEQRKKVEETLAKANVDIQLLKEEMDALKHNRDDINSNLSEVSEQKVALELQVVEYRSIVNDLRDTVAESQTLIDSLQLEFEQLKHERNNALKHAEELHREKQNMVSSSNLAWSTEFSLLELQEATHNFSDAMKIGEGGFGCVYRGLLRNTAVAIKMLRSQNLQGQTQFQQEVAVLSRVRHPNLVILVGYCSEASGLVYEFLPNGSLEDHLARENNKPSLTWQIRTRIIGEICSALIFLHSDKPHAVIHGDLKPANILLNANFVSKLSDFGISCLLNKSSTVSRSFYQTTNPRGTFAYMDPEFLTSGELTARSDIYSFGIIILRLVTGKPALGIAREVEDALDKGELELLVDQSAGDWPFVQAEKLMLLGLQCAELSRRRRPDRMNDVWRVIESLVKSASLPEPQSFRYWLDKNRTPFYFICPISQEVMRDPHIAADGFTYEAEAIKGWLDSGNNTSPMTKSTLEHHQLIPNLALRSAIEEFMQRQQQQMLP
Length885
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.06
Grand average of hydropathy-0.403
Instability index48.97
Isoelectric point6.21
Molecular weight98928.90
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03360
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     192.48|      53|     123|     307|     371|       1
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  307-  360 (85.45/57.24)	NSSSSGIPRDDIS.TLA.SCDFS....NSAPHHLQGDTDSNTNLFGKLEEAFtEAEKHRK
  429-  481 (71.95/41.86)	NSNLSEVSEQKVAlELQ.VVEY.....RSIVNDLRDTVAESQTLIDSLQLEF.EQLKHER
  497-  534 (35.08/27.62)	NMVSS.......S.NLAwSTEFSllelQEATHNFSDAMKIGEGGFG..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     297.02|     100|     122|      16|     123|       2
---------------------------------------------------------------------------
   16-  123 (150.95/112.07)	IAGGVVEA.........AAAAAAANNNRVFVALPaqhKSgKStlswALRHLADVAPAAA...VVVAH.VHSPAQ.MIPMSMGAKFHASKLRPEQVSNYRKYEREEMEKNLNEYLEQCSRMKV
  135-  248 (146.07/88.13)	IAKGIVELillhgvtklVMGAAADKQYSRKMKLP...KS.KT....AIEVMQNANPSCKiwfVCKEHlIYSTREfVVPISPNAQSPITSRGSSNLSALGGTTNQTANNAVNGYIQRSMSEKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.51|      11|     123|     361|     371|       3
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  361-  371 (18.84/12.57)	LAYDESLRRQK
  389-  399 (18.67/12.39)	LFLNESEQRKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.75|      15|      38|     796|     810|       4
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  796-  810 (30.56/20.95)	EPQSFRYWLD..KNRTP
  835-  851 (23.20/14.18)	EAEAIKGWLDsgNNTSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03360 with Med32 domain of Kingdom Viridiplantae
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