<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03355

Description Uncharacterized protein
SequenceMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPPLWAGFAPLASYLFSLQDYLVSEGAHTKKQVQDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANYGGQPPMQTVWSTRVNKSIPPSEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPNLLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSTPSPSNNQVSGNQGGVASATGSSQMQEWVQGAIAKISNNADGAANAAPNPVSGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIHANAQKNSDPSMQKQHLMNGKTEDNTSAVRSGLGAAKVEDGPTSRGQLVFGAKGLEENPVGNKSTRIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPASQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNMPQLKINGSTSRHLSDMEEDTDSSFGIQSLWPRKRRLSERDAAFGLKTSVGLGTFLGVMGSRRDVITAVWRTGLEGEWYKCIRCLRQTCAFAQPGAPNTTNEIEAFWISRWTHACPMCGGSWVKVA
Length956
PositionTail
OrganismLeersia perrieri
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Leersia.
Aromaticity0.07
Grand average of hydropathy-0.165
Instability index44.99
Isoelectric point6.07
Molecular weight103077.45
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03355
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     169.35|      37|      40|     825|     861|       1
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  777-  819 (54.80/30.17)	LGPhMQNMPRPRGADAAGLLLRELElqppaEEWHRRNMFGGPW
  825-  861 (63.36/35.96)	LGP.LDNMPQLKINGSTSRHLSDME.....EDTDSSFGIQSLW
  867-  900 (51.19/27.73)	LSE.RDAAFGLKTSVGLGTFLGVMG.....SRRD...VITAVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.28|      22|      30|     252|     281|       2
---------------------------------------------------------------------------
  252-  278 (31.13/42.86)	PNdvrqLAQiVYSAH...GGEVA.VAFLRGG
  285-  310 (33.14/17.23)	PN....FDQ.VDSYHvnvGSAIApPAFSSSG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     260.96|      82|     110|     539|     627|       3
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  539-  627 (127.16/95.60)	NSTPSPS.....NNQVSGNQGGVASATGSSQMQEwvqGAIAKiSNNADGAANAAPNPVSGRSSFMPiSINTGTFPGTPAVRLIgdCHFLHRLCQ
  650-  736 (133.80/78.37)	NSDPSMQkqhlmNGKTEDNTSAVRSGLGAAKVED...GPTSR.GQLVFGAKGLEENPVGNKSTRIG.SGNAGQGYTSDEVKVL..FLILVDLCK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.99|      55|     431|      20|      76|       4
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   20-   76 (89.37/66.21)	LVNPSTVV..VWEVMPGLGNGIqATAKINATSSLPPSLNPPLWAgFAPLASYLFS.LQDY
  452-  509 (86.62/54.89)	LINPSTLLpePWQASSDMLSSI.GPDKMTVDPNLLLSIQGYVDA.VLDLASHFITrLRRY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.95|      27|      31|     141|     170|       5
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  141-  167 (49.89/33.51)	SVITVVIVEGQYMSPYD.PDEGPSITGW
  174-  201 (47.06/23.53)	SSVQPVVLHPIFGSPANyGGQPPMQTVW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03355 with Med16 domain of Kingdom Viridiplantae
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